Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_M08
(861 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52209|6PGD_HUMAN 6-phosphogluconate dehydrogenase, deca... 382 e-106
sp|P00349|6PGD_SHEEP 6-phosphogluconate dehydrogenase, deca... 382 e-106
sp|Q9DCD0|6PGD_MOUSE 6-phosphogluconate dehydrogenase, deca... 375 e-104
sp|P41570|6PGD_CERCA 6-phosphogluconate dehydrogenase, deca... 354 2e-97
sp|Q17761|6PGD_CAEEL 6-phosphogluconate dehydrogenase, deca... 352 1e-96
sp|P78812|6PGD_SCHPO 6-phosphogluconate dehydrogenase, deca... 350 2e-96
sp|P41572|6PGD_DROME 6-phosphogluconate dehydrogenase, deca... 347 2e-95
sp|P41573|6PGD_DROSI 6-phosphogluconate dehydrogenase, deca... 345 1e-94
sp|O60037|6PGD_CUNEL 6-phosphogluconate dehydrogenase, deca... 343 3e-94
sp|Q7VMX4|6PGD_HAEDU 6-phosphogluconate dehydrogenase, deca... 338 1e-92
>sp|P52209|6PGD_HUMAN 6-phosphogluconate dehydrogenase, decarboxylating
Length = 483
Score = 382 bits (981), Expect = e-106
Identities = 182/281 (64%), Positives = 219/281 (77%)
Frame = +3
Query: 3 GEEGARFGPSLMPGGNVEAWKSIQPLFQDIAAKANKVEPCCDWVGSDGAGHFVKMVHNGI 182
GEEGAR+GPSLMPGGN EAW I+ +FQ IAAK EPCCDWVG +GAGHFVKMVHNGI
Sbjct: 131 GEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGI 190
Query: 183 EYGDMQLICEAYHLMRDLLEMGNEEISNAFADWNNSELESFLIEITSSITKFKANDGTYL 362
EYGDMQLICEAYHLM+D+L M +E++ AF DWN +EL+SFLIEIT++I KF+ DG +L
Sbjct: 191 EYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHL 250
Query: 363 VEDIYDSAGQKGTGKWTAITALDFGVPVTLIAESVFARSLSALKSLRVEASKRFPSNNLL 542
+ I DSAGQKGTGKWTAI+AL++GVPVTLI E+VFAR LS+LK R++ASK+
Sbjct: 251 LPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF 310
Query: 543 NFTGDKTKFLNQIKYALYASKIISYTQGFMMMKSASHEFKWNLDLGKIALMWRGGCIIRS 722
F GDK FL I+ ALYASKIISY QGFM+++ A+ EF W L+ G IALMWRGGCIIRS
Sbjct: 311 QFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRS 370
Query: 723 RFLQNIKDAYEKNKNLSILLFDKFFQSEILKCQESWRHVVA 845
FL IKDA+++N L LL D FF+S + CQ+SWR V+
Sbjct: 371 VFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVS 411
>sp|P00349|6PGD_SHEEP 6-phosphogluconate dehydrogenase, decarboxylating
Length = 483
Score = 382 bits (980), Expect = e-106
Identities = 181/281 (64%), Positives = 222/281 (79%)
Frame = +3
Query: 3 GEEGARFGPSLMPGGNVEAWKSIQPLFQDIAAKANKVEPCCDWVGSDGAGHFVKMVHNGI 182
GE+GAR+GPSLMPGGN EAW I+ +FQ IAAK EPCCDWVG DGAGHFVKMVHNGI
Sbjct: 131 GEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGI 190
Query: 183 EYGDMQLICEAYHLMRDLLEMGNEEISNAFADWNNSELESFLIEITSSITKFKANDGTYL 362
EYGDMQLICEAYHLM+D+L +G++E++ AF +WN +EL+SFLIEIT+SI KF+ DG +L
Sbjct: 191 EYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHL 250
Query: 363 VEDIYDSAGQKGTGKWTAITALDFGVPVTLIAESVFARSLSALKSLRVEASKRFPSNNLL 542
+ I DSAGQKGTGKWTAI+AL++GVPVTLI E+VFAR LS+LK R++ASK+ +
Sbjct: 251 LPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI 310
Query: 543 NFTGDKTKFLNQIKYALYASKIISYTQGFMMMKSASHEFKWNLDLGKIALMWRGGCIIRS 722
F GDK FL I+ ALYASKIISY QGFM+++ A+ EF W L+ G IALMWRGGCIIRS
Sbjct: 311 PFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRS 370
Query: 723 RFLQNIKDAYEKNKNLSILLFDKFFQSEILKCQESWRHVVA 845
FL IKDA+++N L LL D FF+S + CQ+SWR ++
Sbjct: 371 VFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAIS 411
>sp|Q9DCD0|6PGD_MOUSE 6-phosphogluconate dehydrogenase, decarboxylating
Length = 483
Score = 375 bits (963), Expect = e-104
Identities = 179/281 (63%), Positives = 220/281 (78%)
Frame = +3
Query: 3 GEEGARFGPSLMPGGNVEAWKSIQPLFQDIAAKANKVEPCCDWVGSDGAGHFVKMVHNGI 182
GEEGAR+GPSLMPGGN EAW I+ +FQ IAAK EPCCDWVG +GAGHFVKMVHNGI
Sbjct: 131 GEEGARYGPSLMPGGNKEAWPHIKAIFQAIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGI 190
Query: 183 EYGDMQLICEAYHLMRDLLEMGNEEISNAFADWNNSELESFLIEITSSITKFKANDGTYL 362
EYGDMQLICEAYHLM+D+L M +EE++ AF +WN +EL+SFLIEIT++I K++ DG L
Sbjct: 191 EYGDMQLICEAYHLMKDVLGMRHEEMAQAFEEWNKTELDSFLIEITANILKYRDTDGKEL 250
Query: 363 VEDIYDSAGQKGTGKWTAITALDFGVPVTLIAESVFARSLSALKSLRVEASKRFPSNNLL 542
+ I DSAGQKGTGKWTAI+AL++G+PVTLI E+VFAR LS+LK RV+AS++ ++
Sbjct: 251 LPKIRDSAGQKGTGKWTAISALEYGMPVTLIGEAVFARCLSSLKEERVQASQKLKGPKVV 310
Query: 543 NFTGDKTKFLNQIKYALYASKIISYTQGFMMMKSASHEFKWNLDLGKIALMWRGGCIIRS 722
G K FL I+ ALYASKIISY QGFM+++ A+ EF W L+ G IALMWRGGCIIRS
Sbjct: 311 QLEGSKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRS 370
Query: 723 RFLQNIKDAYEKNKNLSILLFDKFFQSEILKCQESWRHVVA 845
FL IKDA+E+N L LL D FF+S + CQ+SWR V++
Sbjct: 371 VFLGKIKDAFERNPELQNLLLDDFFKSAVDNCQDSWRRVIS 411
>sp|P41570|6PGD_CERCA 6-phosphogluconate dehydrogenase, decarboxylating
Length = 481
Score = 354 bits (908), Expect = 2e-97
Identities = 183/285 (64%), Positives = 213/285 (74%)
Frame = +3
Query: 3 GEEGARFGPSLMPGGNVEAWKSIQPLFQDIAAKANKVEPCCDWVGSDGAGHFVKMVHNGI 182
GEEGAR GPSLMPGG+ EAW IQP+FQ I AKA+K EPCC+WVG GAGHFVKMVHNGI
Sbjct: 132 GEEGARHGPSLMPGGHPEAWPLIQPIFQSICAKADK-EPCCEWVGEGGAGHFVKMVHNGI 190
Query: 183 EYGDMQLICEAYHLMRDLLEMGNEEISNAFADWNNSELESFLIEITSSITKFKANDGTYL 362
EYGDMQLICEAY +M+ L + E++ F WN+ EL+SFLIEIT I ++ + G YL
Sbjct: 191 EYGDMQLICEAYQIMK-ALGLSQAEMATEFEKWNSEELDSFLIEITRDILNYQDDRG-YL 248
Query: 363 VEDIYDSAGQKGTGKWTAITALDFGVPVTLIAESVFARSLSALKSLRVEASKRFPSNNLL 542
+E I D+AGQKGTGKWTAI+AL +GVPVTLI E+VF+R LSALK RV ASK+ N+
Sbjct: 249 LERIRDTAGQKGTGKWTAISALQYGVPVTLIGEAVFSRCLSALKDERVAASKQLKGPNVN 308
Query: 543 NFTGDKTKFLNQIKYALYASKIISYTQGFMMMKSASHEFKWNLDLGKIALMWRGGCIIRS 722
D KFLN IK+ALY SKI+SY QGFM+M+ A+ E WNL+ G IALMWRGGCIIRS
Sbjct: 309 AKVEDLPKFLNHIKHALYCSKIVSYAQGFMLMREAAKENNWNLNYGGIALMWRGGCIIRS 368
Query: 723 RFLQNIKDAYEKNKNLSILLFDKFFQSEILKCQESWRHVVANAAL 857
FL NIKDAY +N LS LL D FF+ I Q SWR VVANA L
Sbjct: 369 VFLGNIKDAYTRNPQLSNLLLDDFFKKAIEVGQNSWRQVVANAFL 413
>sp|Q17761|6PGD_CAEEL 6-phosphogluconate dehydrogenase, decarboxylating
Length = 484
Score = 352 bits (902), Expect = 1e-96
Identities = 175/285 (61%), Positives = 213/285 (74%), Gaps = 2/285 (0%)
Frame = +3
Query: 3 GEEGARFGPSLMPGGNVEAWKSIQPLFQDIAAKANKVEPCCDWVGSDGAGHFVKMVHNGI 182
GEEGARFGPSLMPGGN +AW ++ +FQ IAAK+N EPCCDWVG+ G+GHFVKMVHNGI
Sbjct: 131 GEEGARFGPSLMPGGNPKAWPHLKDIFQKIAAKSNG-EPCCDWVGNAGSGHFVKMVHNGI 189
Query: 183 EYGDMQLICEAYHLMRDLLEMGNEEISNAFADWNNSELESFLIEITSSITKFKANDGTYL 362
EYGDMQLI EAYHL+ +E+ +++++ DWN ELESFLIEIT++I K++ G +
Sbjct: 190 EYGDMQLIAEAYHLLSKAVELNHDQMAEVLDDWNKGELESFLIEITANILKYRDEQGEPI 249
Query: 363 VEDIYDSAGQKGTGKWTAITALDFGVPVTLIAESVFARSLSALKSLRVEASKRFPSNNLL 542
V I DSAGQKGTGKWT AL++G+PVTLI E+VFAR LSALK RV ASK+ P +
Sbjct: 250 VPKIRDSAGQKGTGKWTCFAALEYGLPVTLIGEAVFARCLSALKDERVRASKQLPRPQVS 309
Query: 543 NFT--GDKTKFLNQIKYALYASKIISYTQGFMMMKSASHEFKWNLDLGKIALMWRGGCII 716
T DK F+ QI ALYASKI+SY QGFM++ AS +F WNL+ G IALMWRGGCII
Sbjct: 310 PDTVVQDKRVFIKQISKALYASKIVSYAQGFMLLAEASKQFNWNLNFGAIALMWRGGCII 369
Query: 717 RSRFLQNIKDAYEKNKNLSILLFDKFFQSEILKCQESWRHVVANA 851
RSRFL +I+ A++KNK LS LL D FF I + Q+SWR VV A
Sbjct: 370 RSRFLGDIEHAFQKNKQLSNLLLDDFFTKAITEAQDSWRVVVCAA 414
>sp|P78812|6PGD_SCHPO 6-phosphogluconate dehydrogenase, decarboxylating
Length = 492
Score = 350 bits (899), Expect = 2e-96
Identities = 171/285 (60%), Positives = 213/285 (74%)
Frame = +3
Query: 3 GEEGARFGPSLMPGGNVEAWKSIQPLFQDIAAKANKVEPCCDWVGSDGAGHFVKMVHNGI 182
GEEGAR+GPSLMPGGN AW I+P+FQ +AAKA EPCCDWVG GAGH+VKMVHNGI
Sbjct: 134 GEEGARYGPSLMPGGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGAGHYVKMVHNGI 193
Query: 183 EYGDMQLICEAYHLMRDLLEMGNEEISNAFADWNNSELESFLIEITSSITKFKANDGTYL 362
EYGDMQLICE Y +M+ L M +EI++ F WN +L+SFLIEIT + ++KA+DG L
Sbjct: 194 EYGDMQLICETYDIMKRGLGMSCDEIADVFEKWNTGKLDSFLIEITRDVLRYKADDGKPL 253
Query: 363 VEDIYDSAGQKGTGKWTAITALDFGVPVTLIAESVFARSLSALKSLRVEASKRFPSNNLL 542
VE I D+AGQKGTGKWTA AL+ G PV+LI E+VFAR LS+LKS RV ASK+ N
Sbjct: 254 VEKILDAAGQKGTGKWTAQNALEMGTPVSLITEAVFARCLSSLKSERVRASKKLTGPN-T 312
Query: 543 NFTGDKTKFLNQIKYALYASKIISYTQGFMMMKSASHEFKWNLDLGKIALMWRGGCIIRS 722
FTGDK + ++ ++ ALYASKIISY QGFM+M+ A+ E+ W L+ IALMWRGGCIIRS
Sbjct: 313 KFTGDKKQLIDDLEDALYASKIISYAQGFMLMREAAKEYGWKLNNAGIALMWRGGCIIRS 372
Query: 723 RFLQNIKDAYEKNKNLSILLFDKFFQSEILKCQESWRHVVANAAL 857
FL++I +A+ ++ NL +LF FF + + K Q WR VVA AA+
Sbjct: 373 VFLKDITEAFREDPNLESILFHPFFTNGVEKAQAGWRRVVAQAAM 417
>sp|P41572|6PGD_DROME 6-phosphogluconate dehydrogenase, decarboxylating
Length = 481
Score = 347 bits (890), Expect = 2e-95
Identities = 177/283 (62%), Positives = 212/283 (74%)
Frame = +3
Query: 3 GEEGARFGPSLMPGGNVEAWKSIQPLFQDIAAKANKVEPCCDWVGSDGAGHFVKMVHNGI 182
GEEGAR GPSLMPGG+ AW IQP+FQ I AKA+ EPCC+WVG GAGHFVKMVHNGI
Sbjct: 132 GEEGARHGPSLMPGGHEAAWPLIQPIFQAICAKADG-EPCCEWVGDGGAGHFVKMVHNGI 190
Query: 183 EYGDMQLICEAYHLMRDLLEMGNEEISNAFADWNNSELESFLIEITSSITKFKANDGTYL 362
EYGDMQLICEAYH+M+ L + +++++ F WN++EL+SFLIEIT I K+K G YL
Sbjct: 191 EYGDMQLICEAYHIMKSL-GLSADQMADEFGKWNSAELDSFLIEITRDILKYKDGKG-YL 248
Query: 363 VEDIYDSAGQKGTGKWTAITALDFGVPVTLIAESVFARSLSALKSLRVEASKRFPSNNLL 542
+E I D+AGQKGTGKWTAI AL +GVPVTLI E+VF+R LSALK RV+AS +
Sbjct: 249 LERIRDTAGQKGTGKWTAIAALQYGVPVTLIGEAVFSRCLSALKDERVQASSVLKGPSTK 308
Query: 543 NFTGDKTKFLNQIKYALYASKIISYTQGFMMMKSASHEFKWNLDLGKIALMWRGGCIIRS 722
+ TKFL+ IK+ALY +KI+SY QGFM+M+ A+ E KW L+ G IALMWRGGCIIRS
Sbjct: 309 AQVANLTKFLDDIKHALYCAKIVSYAQGFMLMREAARENKWRLNYGGIALMWRGGCIIRS 368
Query: 723 RFLQNIKDAYEKNKNLSILLFDKFFQSEILKCQESWRHVVANA 851
FL NIKDAY LS LL D FF+ I + Q+SWR VVANA
Sbjct: 369 VFLGNIKDAYTSQPELSNLLLDDFFKKAIERGQDSWREVVANA 411
>sp|P41573|6PGD_DROSI 6-phosphogluconate dehydrogenase, decarboxylating
Length = 481
Score = 345 bits (884), Expect = 1e-94
Identities = 176/283 (62%), Positives = 212/283 (74%)
Frame = +3
Query: 3 GEEGARFGPSLMPGGNVEAWKSIQPLFQDIAAKANKVEPCCDWVGSDGAGHFVKMVHNGI 182
GEEGAR GPSLMPGG+ AW IQP+FQ I AKA+ EPCC+WVG GAGHFVKMVHNGI
Sbjct: 132 GEEGARHGPSLMPGGHEAAWPLIQPIFQAICAKADG-EPCCEWVGDGGAGHFVKMVHNGI 190
Query: 183 EYGDMQLICEAYHLMRDLLEMGNEEISNAFADWNNSELESFLIEITSSITKFKANDGTYL 362
EYGDMQLICEAYH+M+ L + +++++ F WN++EL+SFLIEIT I K+K G +L
Sbjct: 191 EYGDMQLICEAYHIMQSL-GLSADQMADEFGKWNSAELDSFLIEITRDILKYKDGKG-HL 248
Query: 363 VEDIYDSAGQKGTGKWTAITALDFGVPVTLIAESVFARSLSALKSLRVEASKRFPSNNLL 542
+E I D+AGQKGTGKWTAI AL +GVPVTLI E+VF+R LSALK RV+AS +
Sbjct: 249 LERIRDTAGQKGTGKWTAIAALQYGVPVTLIGEAVFSRCLSALKDERVQASSVLKGPSTK 308
Query: 543 NFTGDKTKFLNQIKYALYASKIISYTQGFMMMKSASHEFKWNLDLGKIALMWRGGCIIRS 722
+ TKFL+ IK+ALY +KI+SY QGFM+M+ A+ E KW L+ G IALMWRGGCIIRS
Sbjct: 309 AEVANLTKFLDDIKHALYCAKIVSYAQGFMLMREAARENKWRLNYGGIALMWRGGCIIRS 368
Query: 723 RFLQNIKDAYEKNKNLSILLFDKFFQSEILKCQESWRHVVANA 851
FL NIKDAY LS LL D FF+ I + Q+SWR VVANA
Sbjct: 369 VFLGNIKDAYTSQPQLSNLLLDDFFKKAIERGQDSWREVVANA 411
>sp|O60037|6PGD_CUNEL 6-phosphogluconate dehydrogenase, decarboxylating
Length = 485
Score = 343 bits (881), Expect = 3e-94
Identities = 166/285 (58%), Positives = 210/285 (73%)
Frame = +3
Query: 3 GEEGARFGPSLMPGGNVEAWKSIQPLFQDIAAKANKVEPCCDWVGSDGAGHFVKMVHNGI 182
GEEGAR+GPSLMPGGN +AW+ IQP+FQ IAAKA CC+WVG GAGH+VKMVHNGI
Sbjct: 133 GEEGARYGPSLMPGGNSKAWEHIQPIFQAIAAKAPDGASCCEWVGETGAGHYVKMVHNGI 192
Query: 183 EYGDMQLICEAYHLMRDLLEMGNEEISNAFADWNNSELESFLIEITSSITKFKANDGTYL 362
EYGDMQLI E Y ++ + L + ++E+++ F +WN +L+SFLIEIT I +FK DG L
Sbjct: 193 EYGDMQLITEVYQILHEGLGLSHDEMADIFEEWNKGDLDSFLIEITRDILRFKDTDGQPL 252
Query: 363 VEDIYDSAGQKGTGKWTAITALDFGVPVTLIAESVFARSLSALKSLRVEASKRFPSNNLL 542
V I D+AGQKGTGKWTAI +LD G+PVTLI E+V++R LS+LK RV ASK +
Sbjct: 253 VTKIRDTAGQKGTGKWTAIDSLDRGIPVTLIGEAVYSRCLSSLKDERVRASKILQGPSSS 312
Query: 543 NFTGDKTKFLNQIKYALYASKIISYTQGFMMMKSASHEFKWNLDLGKIALMWRGGCIIRS 722
FTGDK F+ Q+ ALYA+KI+SY QG+M+M+ A+ +++W L+ IALMWRGGCIIRS
Sbjct: 313 KFTGDKKTFIAQLGQALYAAKIVSYAQGYMLMRQAAKDYEWKLNNAGIALMWRGGCIIRS 372
Query: 723 RFLQNIKDAYEKNKNLSILLFDKFFQSEILKCQESWRHVVANAAL 857
FL I+DAY KN L LLFD FF+ K Q++WR+V A A L
Sbjct: 373 VFLGKIRDAYTKNPELENLLFDDFFKDATAKAQDAWRNVTAQAVL 417
>sp|Q7VMX4|6PGD_HAEDU 6-phosphogluconate dehydrogenase, decarboxylating
Length = 484
Score = 338 bits (866), Expect = 1e-92
Identities = 163/283 (57%), Positives = 206/283 (72%)
Frame = +3
Query: 3 GEEGARFGPSLMPGGNVEAWKSIQPLFQDIAAKANKVEPCCDWVGSDGAGHFVKMVHNGI 182
GEEGAR GPS+MPGGN EAW ++P+ Q I+AK +K EPCCDWVG +GAGHFVKMVHNGI
Sbjct: 132 GEEGARHGPSIMPGGNEEAWPFVKPILQAISAKTDKDEPCCDWVGKEGAGHFVKMVHNGI 191
Query: 183 EYGDMQLICEAYHLMRDLLEMGNEEISNAFADWNNSELESFLIEITSSITKFKANDGTYL 362
EYGDMQLICEAY ++D L + EE+ FADW N+EL+S+LI+IT+ I +K DG L
Sbjct: 192 EYGDMQLICEAYQFLKDGLGLNYEEMHAIFADWKNTELDSYLIDITADILAYKDADGEPL 251
Query: 363 VEDIYDSAGQKGTGKWTAITALDFGVPVTLIAESVFARSLSALKSLRVEASKRFPSNNLL 542
VE I D+AGQKGTGKWT I ALDFG+P+TLI E+VFAR +SA K RV S+ F + +
Sbjct: 252 VEKILDTAGQKGTGKWTGINALDFGIPLTLITEAVFARCVSAFKDQRVAVSQLF-NKTIT 310
Query: 543 NFTGDKTKFLNQIKYALYASKIISYTQGFMMMKSASHEFKWNLDLGKIALMWRGGCIIRS 722
+ DK +++ ++ AL ASKIISY QGFM+++ AS F+WN++ G AL+WR GCIIRS
Sbjct: 311 PISDDKKEWIEAVRKALLASKIISYAQGFMLIREASENFEWNINYGATALLWREGCIIRS 370
Query: 723 RFLQNIKDAYEKNKNLSILLFDKFFQSEILKCQESWRHVVANA 851
FL NI+DAYE N L L D +FQ+ + WR VVA +
Sbjct: 371 AFLGNIRDAYEANPGLVFLGSDPYFQNILQSAMADWRKVVAKS 413
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,015,515
Number of Sequences: 369166
Number of extensions: 2196006
Number of successful extensions: 5988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5898
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)