Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_L24
(571 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40631|MLH_TETTH Micronuclear linker histone polyprotein... 39 0.012
sp|P17096|HMGIY_HUMAN High mobility group protein HMG-I/HMG... 38 0.016
sp|P22058|CPD1_DROME Chromosomal protein D1 38 0.020
sp|Q9QXP3|HMGIY_CRIGR High mobility group protein HMG-I/HMG... 37 0.026
sp|P17095|HMGIY_MOUSE High mobility group protein HMG-I/HMG... 37 0.035
sp|P52927|HMGIC_MOUSE High mobility group protein HMGI-C (H... 36 0.059
sp|P45481|CBP_MOUSE CREB-binding protein 35 0.13
sp|P52926|HMGIC_HUMAN High mobility group protein HMGI-C (H... 35 0.17
sp|O70472|RW1_MOUSE RW1 protein 34 0.22
sp|P91753|MP62_LYTPI Mitotic apparatus protein p62 34 0.22
>sp|P40631|MLH_TETTH Micronuclear linker histone polyprotein (MIC LH) [Contains:
Micronuclear linker histone-alpha; Micronuclear linker
histone-beta; Micronuclear linker histone-delta;
Micronuclear linker histone-gamma]
Length = 633
Score = 38.5 bits (88), Expect = 0.012
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +2
Query: 227 KHKGRPSKSQKNEIDNKDKKPRGR----PKSNLV---SEMHKDASETTNNYDSVVVKSRG 385
K KG+ + K + +K K + R PKSN + H+ A + N + ++RG
Sbjct: 418 KSKGKSASKSKGKSSSKGKNSKSRSASKPKSNAAQNSNNTHQTADSSENASSTTQTRTRG 477
Query: 386 RPKKSKIPENELSNSTSN 439
R ++ K NE SNS S+
Sbjct: 478 RQREQKDMVNEKSNSKSS 495
Score = 38.1 bits (87), Expect = 0.016
Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 1/143 (0%)
Frame = +2
Query: 2 SLSNGEPQAKKSRGRPKKYTMQEDMNTPSSVKESNDNVKQXXXXXXXXXXXXXXXXXTGD 181
S S G+ +S +PK Q NT + +S++N T
Sbjct: 431 SSSKGKNSKSRSASKPKSNAAQNSNNTHQTA-DSSENASST----------------TQT 473
Query: 182 STEASEKQDNEIVVKKHKGRPS-KSQKNEIDNKDKKPRGRPKSNLVSEMHKDASETTNNY 358
T +++ ++V +K + S K +KN N K + + S K +TTN+
Sbjct: 474 RTRGRQREQKDMVNEKSNSKSSSKGKKNSKSNTRSKSKSKSASKSRKNASKSKKDTTNHG 533
Query: 359 DSVVVKSRGRPKKSKIPENELSN 427
KSR K N+ SN
Sbjct: 534 RQTRSKSRSESKSKSEAPNKPSN 556
>sp|P17096|HMGIY_HUMAN High mobility group protein HMG-I/HMG-Y (HMG-I(Y)) (High mobility
group AT-hook 1) (High mobility group protein A1)
sp|Q6URC2|HMGIY_CANFA High mobility group protein HMG-I/HMG-Y (HMG-I(Y)) (High mobility
group AT-hook 1) (High mobility group protein A1)
Length = 107
Score = 38.1 bits (87), Expect = 0.016
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Frame = +2
Query: 182 STEASEKQDNEIVVKKHKGRPSK------------SQKNEID-NKDKKPRGRPKSNLVSE 322
S + KQ+ + K+ +GRP K SQK + K+PRGRPK +
Sbjct: 9 SQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGS---- 64
Query: 323 MHKDASETTNNYDSVVVKSRGRPKKSKIPENE 418
+K A++T + K RGRPKK + E E
Sbjct: 65 KNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEE 96
>sp|P22058|CPD1_DROME Chromosomal protein D1
Length = 355
Score = 37.7 bits (86), Expect = 0.020
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Frame = +2
Query: 8 SNGEPQAKKSRGRPKKYTMQEDMNTPSSVKESNDNVKQXXXXXXXXXXXXXXXXXTGDST 187
+N P K RGRPK ++ + S D+VK +
Sbjct: 86 NNSSPSPTKGRGRPK--------SSGGAGSGSGDSVKTPGSAKKRKAGRPKKHQPSDSEN 137
Query: 188 EASEKQDNE----IVVKKHKGRPSKSQKNEIDNKDKKPRGRPKSNLVSEMHKDASETTNN 355
E + +D++ I ++ GRPS N ++ + GRPK K A E+ +
Sbjct: 138 EDDQDEDDDGNSSIEERRPVGRPSAGSVNLNISRTGRGLGRPK--------KRAVESNGD 189
Query: 356 YDSVVVKSRGRPKKSK 403
+ V K RGRP ++K
Sbjct: 190 GEPQVPKKRGRPPQNK 205
Score = 35.0 bits (79), Expect = 0.13
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Frame = +2
Query: 2 SLSNGEPQAKKSRGRPKKYTMQEDMNT---PSSVKESNDNVKQXXXXXXXXXXXXXXXXX 172
S +GEPQ K RGRP + +T P+
Sbjct: 186 SNGDGEPQVPKKRGRPPQNKSGSGGSTGYVPTGRPRGRPKANAAPVEKHEDNDDDQDDEN 245
Query: 173 TGDSTEASEKQDNEIVVKKHKGRPSKSQKNEIDNKDKKPRGRPKSNL 313
+G+ +S ++ +V K +GRPS + + KPR RP N+
Sbjct: 246 SGEEEHSSPEKT--VVAPKKRGRPSLAAGKVSKEETTKPRSRPAKNI 290
Score = 34.7 bits (78), Expect = 0.17
Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 28/164 (17%)
Frame = +2
Query: 29 KKSRGRPKKYTMQEDMNTPSSVKESNDNV---KQXXXXXXXXXXXXXXXXXTGDSTEASE 199
K+ GRPKK+ + N ++ + N ++ TG +
Sbjct: 121 KRKAGRPKKHQPSDSENEDDQDEDDDGNSSIEERRPVGRPSAGSVNLNISRTGRGLGRPK 180
Query: 200 KQ------DNEIVVKKHKGRPSKSQKNEIDNKDK----KPRGRPKSNLVS-EMHKDASET 346
K+ D E V K +GRP +++ + +PRGRPK+N E H+D +
Sbjct: 181 KRAVESNGDGEPQVPKKRGRPPQNKSGSGGSTGYVPTGRPRGRPKANAAPVEKHEDNDDD 240
Query: 347 TNNYDS------------VVVKSRGRPK--KSKIPENELSNSTS 436
++ +S V K RGRP K+ + E + S
Sbjct: 241 QDDENSGEEEHSSPEKTVVAPKKRGRPSLAAGKVSKEETTKPRS 284
>sp|Q9QXP3|HMGIY_CRIGR High mobility group protein HMG-I/HMG-Y (HMG-I(Y)) (High mobility
group AT-hook 1) (High mobility group protein A1)
Length = 107
Score = 37.4 bits (85), Expect = 0.026
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Frame = +2
Query: 182 STEASEKQDNEIVVKKHKGRPSK------------SQKNEID-NKDKKPRGRPKSNLVSE 322
S + KQ+ + K+ +GRP K SQK + K+PRGRPK +
Sbjct: 9 SQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGS---- 64
Query: 323 MHKDASETTNNYDSVVVKSRGRPKKSKIPENE 418
+K A++T + K RGRPKK + E E
Sbjct: 65 KNKGAAKTRKATTAPGRKPRGRPKKLEKEEEE 96
>sp|P17095|HMGIY_MOUSE High mobility group protein HMG-I/HMG-Y (HMG-I(Y)) (High mobility
group AT-hook 1) (High mobility group protein A1)
Length = 107
Score = 37.0 bits (84), Expect = 0.035
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Frame = +2
Query: 182 STEASEKQDNEIVVKKHKGRPSK------------SQKNEID-NKDKKPRGRPKSNLVSE 322
S + KQ+ + K+ +GRP K SQK + K+PRGRPK +
Sbjct: 9 SQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGS---- 64
Query: 323 MHKDASETTNNYDSVVVKSRGRPKKSKIPENE 418
+K A++T + K RGRPKK + E E
Sbjct: 65 KNKGAAKTRKVTTAPGRKPRGRPKKLEKEEEE 96
>sp|P52927|HMGIC_MOUSE High mobility group protein HMGI-C (High mobility group AT-hook 2)
Length = 108
Score = 36.2 bits (82), Expect = 0.059
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Frame = +2
Query: 182 STEASEKQDNEIVVKKHKGRPSKSQKNEI-DNKDKKPRGRPKSNLVSEMHKDASETTNNY 358
ST A + + K+ +GRP K Q+ + K+PRGRPK + K A +
Sbjct: 12 STSAQGQPAAPVPQKRGRGRPRKQQQEPTCEPSPKRPRGRPKGSKNKSPSKAAQKKAETI 71
Query: 359 DSVVVKSRGRPKK------SKIPENELSNSTS 436
+ RGRP+K K P E ++S
Sbjct: 72 GE--KRPRGRPRKWPQQVVQKKPAQETEETSS 101
>sp|P45481|CBP_MOUSE CREB-binding protein
Length = 2441
Score = 35.0 bits (79), Expect = 0.13
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 11 NGEPQAKKSRGRPKKYTMQEDMNTPSSVKESNDNVKQ 121
+ EP+ +S+G P+ M+ED+ S VKE D +Q
Sbjct: 1006 DAEPEPTESKGEPRSEMMEEDLQGSSQVKEETDTTEQ 1042
>sp|P52926|HMGIC_HUMAN High mobility group protein HMGI-C (High mobility group AT-hook 2)
Length = 109
Score = 34.7 bits (78), Expect = 0.17
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = +2
Query: 182 STEASEKQDNEIVVKKHKGRPSKSQKNEI-DNKDKKPRGRPKSNLVSEMHKDASETTNNY 358
ST A + K+ +GRP K Q+ + K+PRGRPK + K A +
Sbjct: 12 STSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEAT 71
Query: 359 DSVVVKSRGRPKK------SKIPENELSNSTSN 439
+ RGRP+K K P E + TS+
Sbjct: 72 GE--KRPRGRPRKWPQQVVQKKPAQEETEETSS 102
>sp|O70472|RW1_MOUSE RW1 protein
Length = 1829
Score = 34.3 bits (77), Expect = 0.22
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 5/136 (3%)
Frame = +2
Query: 17 EPQAKKSRGRPKKYTMQEDMNTPSSVKESNDNVKQXXXXXXXXXXXXXXXXXTGDSTEAS 196
+P + S+ + K ++Q+ P +E + + + +TE S
Sbjct: 1320 QPPSPMSKSKGKGKSLQQRKAKPPKKQEEKEKRGKGKPQEDELKDALADDDSSSTTTETS 1379
Query: 197 EKQDNEIV---VKKHKGRPSKSQKNEIDNKDKKPRGRPKSNLVSEMHKDASETTNN--YD 361
++ +KHKGRP+ +K E + KP+ + N E+ D ++ Y
Sbjct: 1380 NPDTEPLLREDTEKHKGRPAVPEKQESELSQGKPKSKKLLNAKKEIPTDVKGSSFELPYT 1439
Query: 362 SVVVKSRGRPKKSKIP 409
+ + R +KIP
Sbjct: 1440 PSLENKQRRNLPTKIP 1455
>sp|P91753|MP62_LYTPI Mitotic apparatus protein p62
Length = 411
Score = 34.3 bits (77), Expect = 0.22
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +2
Query: 179 DSTEASEKQDNEIVVKKHKGRPSKSQKNEIDNKDKKPRGRPKSNLVSEMHKDASETTNNY 358
+ E + +D E +P+K K ++ N KP+G PKS M + + + +
Sbjct: 305 EDEEGMDDEDEEEEEDSSPVKPAKKAKGKV-NGTAKPKGTPKSQANKGMKEKKTYSLEDM 363
Query: 359 DSVVVKSRGRPKKSK 403
++KS +PKK +
Sbjct: 364 KQDLIKSPSKPKKEE 378
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,299,178
Number of Sequences: 369166
Number of extensions: 978268
Number of successful extensions: 3631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3603
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)