Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_L23-1
(153 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 49 5e-06
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 47 1e-05
sp|Q63088|CATJ_RAT Cathepsin J precursor (Cathepsin L-relat... 47 1e-05
sp|P25773|CATL_FELCA Cathepsin L (Progesterone-dependent pr... 47 1e-05
sp|Q9QZE3|CATQ_RAT Cathepsin Q precursor 47 2e-05
sp|P12412|CYSEP_VIGMU Vignain precursor (Bean endopeptidase... 46 2e-05
sp|P54639|CYSP4_DICDI Cysteine proteinase 4 precursor 46 2e-05
sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (C... 46 2e-05
sp|P25803|CYSEP_PHAVU Vignain precursor (Bean endopeptidase... 46 3e-05
sp|Q9JIA9|CATR_MOUSE Cathepsin R precursor 46 3e-05
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 48.5 bits (114), Expect = 5e-06
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +2
Query: 5 GSNYWLVKNSWGTVWGIDGYIKM*RLKE 88
G +YWLVKNSWGT WG G+IKM R KE
Sbjct: 300 GEDYWLVKNSWGTTWGDKGFIKMLRNKE 327
Score = 28.9 bits (63), Expect = 3.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2
Query: 149 KDANNQCGIATKASYPLV 96
++ NQCGIA+ +SYPLV
Sbjct: 324 RNKENQCGIASASSYPLV 341
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 47.4 bits (111), Expect = 1e-05
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +2
Query: 5 GSNYWLVKNSWGTVWGIDGYIKM*R 79
G +YWLVKNSWGT WG GYIKM R
Sbjct: 298 GMDYWLVKNSWGTTWGEQGYIKMAR 322
Score = 31.2 bits (69), Expect = 0.79
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 152 SKDANNQCGIATKASYPLV 96
+++ NNQCGIAT +SYP V
Sbjct: 321 ARNQNNQCGIATASSYPTV 339
>sp|Q63088|CATJ_RAT Cathepsin J precursor (Cathepsin L-related protein)
Length = 236
Score = 47.4 bits (111), Expect = 1e-05
Identities = 16/24 (66%), Positives = 22/24 (91%)
Frame = +2
Query: 2 DGSNYWLVKNSWGTVWGIDGYIKM 73
DG+NYWL+KNSWG WGI+G++K+
Sbjct: 193 DGNNYWLIKNSWGEEWGINGFMKI 216
Score = 30.0 bits (66), Expect = 1.8
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -2
Query: 152 SKDANNQCGIATKASYP 102
+KD NN CGIA++AS+P
Sbjct: 217 AKDRNNHCGIASQASFP 233
>sp|P25773|CATL_FELCA Cathepsin L (Progesterone-dependent protein) (PDP)
Length = 139
Score = 47.0 bits (110), Expect = 1e-05
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 2 DGSNYWLVKNSWGTVWGIDGYIKM 73
+ YW++KNSWGT WG+DGYIKM
Sbjct: 112 ENKKYWIIKNSWGTDWGMDGYIKM 135
>sp|Q9QZE3|CATQ_RAT Cathepsin Q precursor
Length = 343
Score = 46.6 bits (109), Expect = 2e-05
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +2
Query: 2 DGSNYWLVKNSWGTVWGIDGYIKM 73
DG+NYWL+KNSWG WG+ GY+K+
Sbjct: 301 DGNNYWLIKNSWGKRWGLRGYMKI 324
Score = 27.7 bits (60), Expect = 8.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 152 SKDANNQCGIATKASYPLV 96
+KD NN C IA+ A YP V
Sbjct: 325 AKDRNNHCAIASLAQYPTV 343
>sp|P12412|CYSEP_VIGMU Vignain precursor (Bean endopeptidase) (Cysteine proteinase)
(Sulfhydryl-endopeptidase) (SH-EP) [Contains: Vignain-1;
Vignain-2]
Length = 362
Score = 46.2 bits (108), Expect = 2e-05
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 2 DGSNYWLVKNSWGTVWGIDGYIKM*R 79
DG+NYW+V+NSWG WG GYI+M R
Sbjct: 300 DGTNYWIVRNSWGPEWGEQGYIRMQR 325
>sp|P54639|CYSP4_DICDI Cysteine proteinase 4 precursor
Length = 442
Score = 46.2 bits (108), Expect = 2e-05
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 11 NYWLVKNSWGTVWGIDGYIKM 73
NYW+VKNSWGT WG+DGYI M
Sbjct: 400 NYWIVKNSWGTSWGMDGYIFM 420
Score = 32.0 bits (71), Expect = 0.46
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2
Query: 152 SKDANNQCGIATKASYP 102
SKD NN CGIAT AS+P
Sbjct: 421 SKDRNNNCGIATMASFP 437
>sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (Catlrp-p)
Length = 333
Score = 46.2 bits (108), Expect = 2e-05
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = +2
Query: 2 DGSNYWLVKNSWGTVWGIDGYIKM 73
DG+NYWL+KNSWG WG++GY+++
Sbjct: 290 DGNNYWLIKNSWGEEWGMNGYMQI 313
Score = 30.0 bits (66), Expect = 1.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -2
Query: 152 SKDANNQCGIATKASYP 102
+KD NN CGIA+ ASYP
Sbjct: 314 AKDHNNHCGIASLASYP 330
>sp|P25803|CYSEP_PHAVU Vignain precursor (Bean endopeptidase) (Cysteine proteinase EP-C1)
Length = 362
Score = 45.8 bits (107), Expect = 3e-05
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 2 DGSNYWLVKNSWGTVWGIDGYIKM*R 79
DG+NYW+V+NSWG WG GYI+M R
Sbjct: 300 DGTNYWIVRNSWGPEWGEHGYIRMQR 325
>sp|Q9JIA9|CATR_MOUSE Cathepsin R precursor
Length = 334
Score = 45.8 bits (107), Expect = 3e-05
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +2
Query: 2 DGSNYWLVKNSWGTVWGIDGYIKM 73
DG++YWL+KNSWG WGI GY+K+
Sbjct: 292 DGNHYWLIKNSWGKRWGIRGYMKL 315
Score = 29.3 bits (64), Expect = 3.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 152 SKDANNQCGIATKASYPLV 96
+KD NN CGIA+ A YP +
Sbjct: 316 AKDKNNHCGIASYAHYPTI 334
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,637,122
Number of Sequences: 369166
Number of extensions: 280268
Number of successful extensions: 901
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 68,354,980
effective HSP length: 23
effective length of database: 64,106,075
effective search space used: 1730864025
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)