Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_L20
(350 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 211 3e-55
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 211 4e-55
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 211 4e-55
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 211 4e-55
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 210 7e-55
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 209 2e-54
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 208 3e-54
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 208 3e-54
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 208 4e-54
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 206 1e-53
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 211 bits (538), Expect = 3e-55
Identities = 96/116 (82%), Positives = 109/116 (93%)
Frame = +1
Query: 1 GTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSD 180
GTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S
Sbjct: 105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQ 164
Query: 181 KRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 348
KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S+NMPW+KGW++TRK+
Sbjct: 165 KRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 211 bits (537), Expect = 4e-55
Identities = 96/116 (82%), Positives = 108/116 (93%)
Frame = +1
Query: 1 GTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSD 180
GTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S
Sbjct: 105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQ 164
Query: 181 KRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 348
KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 165 KRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 211 bits (537), Expect = 4e-55
Identities = 96/116 (82%), Positives = 108/116 (93%)
Frame = +1
Query: 1 GTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSD 180
GTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S
Sbjct: 105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQ 164
Query: 181 KRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 348
KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 165 KRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 211 bits (537), Expect = 4e-55
Identities = 96/116 (82%), Positives = 108/116 (93%)
Frame = +1
Query: 1 GTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSD 180
GTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S
Sbjct: 105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQ 164
Query: 181 KRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 348
KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 165 KRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 210 bits (535), Expect = 7e-55
Identities = 96/115 (83%), Positives = 107/115 (93%)
Frame = +1
Query: 1 GTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSD 180
GTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVG+NKMDSTEPP+S
Sbjct: 105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGINKMDSTEPPYSQ 164
Query: 181 KRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 345
KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW+ITRK
Sbjct: 165 KRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSPNMPWFKGWKITRK 219
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 209 bits (531), Expect = 2e-54
Identities = 96/115 (83%), Positives = 108/115 (93%)
Frame = +1
Query: 1 GTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSD 180
GTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+
Sbjct: 105 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164
Query: 181 KRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 345
RFEEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW++ RK
Sbjct: 165 PRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERK 219
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 208 bits (530), Expect = 3e-54
Identities = 96/115 (83%), Positives = 107/115 (93%)
Frame = +1
Query: 1 GTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSD 180
GTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+
Sbjct: 91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 150
Query: 181 KRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 345
RFEEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 151 SRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 208 bits (530), Expect = 3e-54
Identities = 96/115 (83%), Positives = 107/115 (93%)
Frame = +1
Query: 1 GTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSD 180
GTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+
Sbjct: 91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 150
Query: 181 KRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 345
RFEEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 151 SRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 208 bits (529), Expect = 4e-54
Identities = 95/115 (82%), Positives = 109/115 (94%)
Frame = +1
Query: 1 GTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSD 180
GTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDS+EPP+S+
Sbjct: 105 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSSEPPYSE 164
Query: 181 KRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 345
R+EEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E STNMPW+KGW++ RK
Sbjct: 165 ARYEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTNMPWFKGWKVERK 219
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 206 bits (524), Expect = 1e-53
Identities = 96/115 (83%), Positives = 105/115 (91%)
Frame = +1
Query: 1 GTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSD 180
GTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPPFS+
Sbjct: 105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPFSE 164
Query: 181 KRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 345
RFEEIKKEV +Y+KK+GY P AVAFVPISGW+GDNM+E S +PWYKGW I RK
Sbjct: 165 ARFEEIKKEVSAYIKKIGYNPAAVAFVPISGWHGDNMLEASDRLPWYKGWNIERK 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,845,815
Number of Sequences: 369166
Number of extensions: 720041
Number of successful extensions: 2270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2154
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)