Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_L05
(185 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q836A6|LYAT_ENTFA Membrane-bound protein lytR 30 1.3
sp|Q9A710|MMPA_CAUCR Metalloprotease mmpA (membrane metallo... 29 3.8
>sp|Q836A6|LYAT_ENTFA Membrane-bound protein lytR
Length = 303
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 168 IYFEFILVIWLVIFNIF*LLYWNITKTSSRSYNT 67
I F ILV++L + + LYW+++K+ ++Y T
Sbjct: 10 IIFGIILVLFLAVVGMGAKLYWDVSKSMDKTYET 43
>sp|Q9A710|MMPA_CAUCR Metalloprotease mmpA (membrane metalloprotease A)
Length = 398
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 7 LILVSLGCQFTESTSPQLNKGVVASAGGF--GDVPIK 111
+ILVS G Q T +T ++ G A+A GF GDV +K
Sbjct: 136 VILVSFGAQKTSTTVGEVVAGTPAAAAGFKPGDVILK 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,907,682
Number of Sequences: 369166
Number of extensions: 149060
Number of successful extensions: 463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 68,354,980
effective HSP length: 34
effective length of database: 62,073,990
effective search space used: 1675997730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)