Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_L02
(513 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86Y39|N5BM_HUMAN NADH-ubiquinone oxidoreductase subunit... 39 0.009
sp|Q9D8B4|N5BM_MOUSE NADH-ubiquinone oxidoreductase subunit... 35 0.10
sp|Q80W89|N5BM_RAT NADH-ubiquinone oxidoreductase subunit B... 34 0.23
sp|Q8HXG6|N5BM_BOVIN NADH-ubiquinone oxidoreductase subunit... 33 0.30
sp|P22170|TGB2_FXMV TGB2 protein (Triple gene block 2 prote... 32 0.88
sp|Q973G3|Y939_SULTO Hypothetical protein ST0939 precursor 31 1.5
sp|P30304|MPIP1_HUMAN M-phase inducer phosphatase 1 (Dual s... 30 2.6
sp|P21906|GLF_ZYMMO Glucose facilitated diffusion protein 30 2.6
sp|P38330|YB88_YEAST Hypothetical 83.7 kDa protein in PRP5-... 30 4.4
sp|P26204|BGLS_TRIRP Non-cyanogenic beta-glucosidase precursor 29 7.5
>sp|Q86Y39|N5BM_HUMAN NADH-ubiquinone oxidoreductase subunit B14.7 (Complex I-B14.7)
(CI-B14.7)
Length = 141
Score = 38.5 bits (88), Expect = 0.009
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 67 VGSVTGYMLTGAMGGALYTMTATSSSFVRGNKDTPLNHFLAGTITSLFMLKPPYIYR-KV 243
V V Y T A GA++ +T S+ VR D PLN+FL G L + + Y
Sbjct: 53 VAKVGQYTFTAAAVGAVFGLTTCISAHVREKPDDPLNYFLGGCAGGLTLGARTHNYGIGA 112
Query: 244 VLSISIGIVCSIVKV 288
+ GI S+VK+
Sbjct: 113 AACVYFGIAASLVKM 127
>sp|Q9D8B4|N5BM_MOUSE NADH-ubiquinone oxidoreductase subunit B14.7 (Complex I-B14.7)
(CI-B14.7)
Length = 141
Score = 35.0 bits (79), Expect = 0.10
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 67 VGSVTGYMLTGAMGGALYTMTATSSSFVRGNKDTPLNHFLAGTITSLFMLKPPYIYRKVV 246
V V Y T A GA++ +T S+ VR D PLN+F+ G L + + Y
Sbjct: 53 VARVGRYTFTAAAIGAMFGLTTCVSAQVREKPDDPLNYFIGGCAGGLTLGARTHSYGTAA 112
Query: 247 LS-ISIGIVCSIVKV 288
+ + +G ++ K+
Sbjct: 113 MGCVYMGTAAALFKI 127
>sp|Q80W89|N5BM_RAT NADH-ubiquinone oxidoreductase subunit B14.7 (Complex I-B14.7)
(CI-B14.7)
Length = 141
Score = 33.9 bits (76), Expect = 0.23
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +1
Query: 25 SILSVAENLTPSIL--VGSVTGYMLTGAMGGALYTMTATSSSFVRGNKDTPLNHFLAGTI 198
S S+ N S L V V + T A GA++ +T S+ VR D PLN+F+ G
Sbjct: 37 SAYSITHNPADSPLEAVARVGRFTFTAAAIGAMFGLTTCVSAQVREKPDDPLNYFIGGCA 96
Query: 199 TSLFMLKPPYIYRKVVLS-ISIGIVCSIVKV 288
L + + Y + + +G ++ K+
Sbjct: 97 GGLTLGARTHSYGTAAIGCVYMGTAAALFKM 127
>sp|Q8HXG6|N5BM_BOVIN NADH-ubiquinone oxidoreductase subunit B14.7 (Complex I-B14.7)
(CI-B14.7)
Length = 141
Score = 33.5 bits (75), Expect = 0.30
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 25 SILSVAENLTPSILVGSV-TG-YMLTGAMGGALYTMTATSSSFVRGNKDTPLNHFLAGTI 198
S SVA S L G TG Y T A GA++ +T+ S+ VR D PLN+ + G
Sbjct: 37 SAYSVALKTPTSFLEGVARTGRYTFTAAAIGAIFGLTSCISAQVREKPDDPLNYLIGGCA 96
Query: 199 TSLFM 213
L +
Sbjct: 97 GGLIL 101
>sp|P22170|TGB2_FXMV TGB2 protein (Triple gene block 2 protein) (TGBp2) (12 kDa protein)
(ORF 3 protein)
Length = 105
Score = 32.0 bits (71), Expect = 0.88
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Frame = +1
Query: 187 AGTITSLFMLKPPYIYRKVVLSISIGIVCSIV-KVLTMSDCTRVMPNNNNL-----FIES 348
A I++ L+PP K +L+++IGI S+V +LT ++ V N ++L +I+
Sbjct: 9 APAISTPLTLRPPPDNTKAILTVAIGIAASLVFFMLTRNNLPHVGDNIHSLPHGGSYIDG 68
Query: 349 ----GYRKPMAHYALKNML 393
YR P + Y N+L
Sbjct: 69 TKSINYRPPASRYPSSNLL 87
>sp|Q973G3|Y939_SULTO Hypothetical protein ST0939 precursor
Length = 709
Score = 31.2 bits (69), Expect = 1.5
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Frame = +1
Query: 61 ILVGSVTGYMLTGAMGGALYTMTATSSSFVRGNKDTPLNHFLAGTITSLFMLKPPYIYRK 240
I VG++T Y+LT G LYT+ + + + GN F+A + +L + +Y+K
Sbjct: 443 INVGNITSYVLTNLTAGELYTIELIAYNKI-GNSSISSVSFIAASKANLTVT----VYKK 497
Query: 241 V-VLSISIGIVCSIVKVLTMSDCTRVMPN----NNNLFIESGYRKPMAHYALKNMLGIPS 405
+ +S +LT+S V+ N N + F++ + N++GI
Sbjct: 498 INGFLVSWNSTSKAKYILTVSKENVVLLNVSTTNTSYFVKVPFGVYNISLEAVNIVGITK 557
Query: 406 Y 408
Y
Sbjct: 558 Y 558
>sp|P30304|MPIP1_HUMAN M-phase inducer phosphatase 1 (Dual specificity phosphatase Cdc25A)
Length = 524
Score = 30.4 bits (67), Expect = 2.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 225 IYL*KSGFKHFYWNCLFYCEGADYERLYSCDAQQ 326
+Y+ K G+K F+ C YCE Y ++ D ++
Sbjct: 463 LYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFKE 496
>sp|P21906|GLF_ZYMMO Glucose facilitated diffusion protein
Length = 473
Score = 30.4 bits (67), Expect = 2.6
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +1
Query: 13 LNAFSILSVAENLTPSILVGSVTGYMLTGAMG---GALYTMTATSSSFVRGNKDTPLNHF 183
L+A + S++ + ++LVG VTG +L+G +G G + +S FV L
Sbjct: 48 LSATAAASLSGMVVVAVLVGCVTGSLLSGWIGIRFGRRGGLLMSSICFVAAGFGAALTEK 107
Query: 184 LAGTITSLFMLKPPYIYRKVVLSISIGIVCSI 279
L GT S + + + + + + IG+V ++
Sbjct: 108 LFGTGGSALQI---FCFFRFLAGLGIGVVSTL 136
>sp|P38330|YB88_YEAST Hypothetical 83.7 kDa protein in PRP5-THI2 intergenic region
Length = 731
Score = 29.6 bits (65), Expect = 4.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 318 HHTSTVAHSQHLHNRTDNSNRNA*NHFSIDIWWFKHK 208
HH + H Q+ HN + +N N N S D WF HK
Sbjct: 107 HHNNNRNHHQNNHNHSKYNNSNQGNSISPDSPWF-HK 142
>sp|P26204|BGLS_TRIRP Non-cyanogenic beta-glucosidase precursor
Length = 493
Score = 28.9 bits (63), Expect = 7.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 463 LHHSIINYFLNFQNLVSYHMTEYQAYFSEHNEPWAFYN 350
L+ +IN F ++ +L + Y+S NEPW F N
Sbjct: 173 LNSGVINDFRDYTDLCFKEFGDRVRYWSTLNEPWVFSN 210
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,670,296
Number of Sequences: 369166
Number of extensions: 1042296
Number of successful extensions: 2780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2775
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)