Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_K24
(288 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14764|MVP_HUMAN Major vault protein (MVP) (Lung resista... 73 2e-13
sp|Q9EQK5|MVP_MOUSE Major vault protein (MVP) 70 1e-12
sp|Q62667|MVP_RAT Major vault protein (MVP) 70 1e-12
sp|Q9DGM7|MVP_ICTPU Major vault protein (MVP) 69 3e-12
sp|Q90405|MVP_DISOM Major vault protein (MVP100) (P100) 63 2e-10
sp|P34118|MVPA_DICDI Major vault protein alpha (MVP-alpha) 59 3e-09
sp|P54659|MVPB_DICDI Major vault protein beta (MVP-beta) 57 2e-08
sp|P03640|VGE_BPG4 Lysis protein (E protein) (GPE) 29 2.9
sp|Q9L1A3|ARGB_STRCO Acetylglutamate kinase (NAG kinase) (A... 28 6.5
sp|Q828A4|ARGB_STRAW Acetylglutamate kinase (NAG kinase) (A... 28 8.5
>sp|Q14764|MVP_HUMAN Major vault protein (MVP) (Lung resistance-related protein)
Length = 893
Score = 73.2 bits (178), Expect = 2e-13
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = +1
Query: 4 EAIGPNTLIEIAKAGPDGDVRLLQSMGLKSALITDGSTPINLFQTAHGLI 153
EAIGP+T+ ++A AGP+ V+LLQS+GLKS LITDGSTPINLF TA GL+
Sbjct: 800 EAIGPSTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSTPINLFNTAFGLL 849
>sp|Q9EQK5|MVP_MOUSE Major vault protein (MVP)
Length = 861
Score = 70.5 bits (171), Expect = 1e-12
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = +1
Query: 4 EAIGPNTLIEIAKAGPDGDVRLLQSMGLKSALITDGSTPINLFQTAHGLI 153
EA+GP T+ ++A AGP+ V+LLQS+GLKS LITDGS+PINLF TA GL+
Sbjct: 800 EALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSSPINLFNTAFGLL 849
>sp|Q62667|MVP_RAT Major vault protein (MVP)
Length = 861
Score = 70.5 bits (171), Expect = 1e-12
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = +1
Query: 4 EAIGPNTLIEIAKAGPDGDVRLLQSMGLKSALITDGSTPINLFQTAHGLI 153
EA+GP T+ ++A AGP+ V+LLQS+GLKS LITDGS+PINLF TA GL+
Sbjct: 800 EALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSSPINLFSTAFGLL 849
>sp|Q9DGM7|MVP_ICTPU Major vault protein (MVP)
Length = 871
Score = 69.3 bits (168), Expect = 3e-12
Identities = 33/51 (64%), Positives = 43/51 (84%)
Frame = +1
Query: 1 VEAIGPNTLIEIAKAGPDGDVRLLQSMGLKSALITDGSTPINLFQTAHGLI 153
VEAIG TL +A+AGP+ V++LQ++GLKS LITDGS+PINLF TA+GL+
Sbjct: 814 VEAIGSETLTAMARAGPELQVKMLQALGLKSTLITDGSSPINLFTTANGLL 864
>sp|Q90405|MVP_DISOM Major vault protein (MVP100) (P100)
Length = 852
Score = 63.2 bits (152), Expect = 2e-10
Identities = 29/51 (56%), Positives = 40/51 (78%)
Frame = +1
Query: 1 VEAIGPNTLIEIAKAGPDGDVRLLQSMGLKSALITDGSTPINLFQTAHGLI 153
V+AIG +T+ IA++GP+ V+LLQ +GL S LITDGSTP+NLF A G++
Sbjct: 789 VQAIGADTIRAIAESGPELQVKLLQGLGLNSTLITDGSTPVNLFSAAKGML 839
>sp|P34118|MVPA_DICDI Major vault protein alpha (MVP-alpha)
Length = 843
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/51 (56%), Positives = 39/51 (76%)
Frame = +1
Query: 1 VEAIGPNTLIEIAKAGPDGDVRLLQSMGLKSALITDGSTPINLFQTAHGLI 153
VE+IG +TL IA AG + +LLQ +GLKS +ITDG +P+NLF TA+G+I
Sbjct: 773 VESIGRDTLKSIACAGNEMQAKLLQGLGLKSFMITDGKSPLNLFDTANGII 823
>sp|P54659|MVPB_DICDI Major vault protein beta (MVP-beta)
Length = 846
Score = 56.6 bits (135), Expect = 2e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Frame = +1
Query: 1 VEAIGPNTLIEIAKAGPDGDVRLLQSMGLKSALITDGSTPINLFQTAHGLI 153
VEA+G +T+ IA+A + +LL +GLKS +ITDG +P+NLF TA+GLI
Sbjct: 785 VEALGSDTIKSIAQAPEETKAKLLAGLGLKSFMITDGKSPLNLFDTANGLI 835
>sp|P03640|VGE_BPG4 Lysis protein (E protein) (GPE)
Length = 96
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 194 SPLVTFIPAQMDL*INPWAVWNKLIGVDPSVINADLRPIDCS 69
S L+TFIP ++ W V + L V+NA L+P++CS
Sbjct: 22 SLLITFIPLTSKPPVSSWKVLS-LPKTSSMVLNAPLKPLNCS 62
>sp|Q9L1A3|ARGB_STRCO Acetylglutamate kinase (NAG kinase) (AGK) (N-acetyl-L-glutamate
5-phosphotransferase)
Length = 306
Score = 28.1 bits (61), Expect = 6.5
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 13 GPNTLI-EIAKAGPDGDVRLLQSMGLKSALITDGSTPINLFQTAHGLIHKSICAGMNVTR 189
G N +I E KA DV L+ GLK ++ G I+ HG++ AG+ VT
Sbjct: 42 GGNAMIDEDLKAAFAQDVVFLRHAGLKPVVVHGGGPQISAALDKHGIV-SEFKAGLRVTT 100
Query: 190 GD 195
D
Sbjct: 101 ED 102
>sp|Q828A4|ARGB_STRAW Acetylglutamate kinase (NAG kinase) (AGK) (N-acetyl-L-glutamate
5-phosphotransferase)
Length = 304
Score = 27.7 bits (60), Expect = 8.5
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 1 VEAIGPNTLI-EIAKAGPDGDVRLLQSMGLKSALITDGSTPINLFQTAHGLIHKSICAGM 177
V G N +I E KA D+ L GLK ++ G I+ HG++ AG+
Sbjct: 34 VVKFGGNAMIDEELKAAFAQDIVFLHHAGLKPVVVHGGGPQISAALDRHGIV-SEFKAGL 92
Query: 178 NVTRGD 195
VT D
Sbjct: 93 RVTTED 98
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,592,983
Number of Sequences: 369166
Number of extensions: 605689
Number of successful extensions: 1133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)