Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_K22
(537 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenas... 198 6e-51
sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenas... 198 8e-51
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 195 5e-50
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 194 9e-50
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 194 1e-49
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 193 2e-49
sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogena... 192 4e-49
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 192 4e-49
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 192 4e-49
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 191 1e-48
>sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Major larval
surface antigen) (P-37)
Length = 338
Score = 198 bits (504), Expect = 6e-51
Identities = 97/143 (67%), Positives = 109/143 (76%)
Frame = +3
Query: 3 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAA 182
KLWRDGRGA QNIIP IP LNGK+TGMAFRVP PDVSVVDLTC+L K A
Sbjct: 195 KLWRDGRGAMQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTCRLGKGA 254
Query: 183 KYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAW 362
Y+EIKAA+K A+ +KGIL YTE+EVVS DF G +SSIFDAKAGI L + FVKLV+W
Sbjct: 255 SYEEIKAAVKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSW 314
Query: 363 YDNEYGYSCRVIDLIQHMSTKDH 431
YDNE+GYSCRV+DLI HM DH
Sbjct: 315 YDNEFGYSCRVVDLITHMHKVDH 337
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 198 bits (503), Expect = 8e-51
Identities = 98/142 (69%), Positives = 113/142 (79%)
Frame = +3
Query: 3 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAA 182
KLWRDGRGA QNIIP IPELNGKITGMAFRVP P+VSVVDLTC+L+K A
Sbjct: 192 KLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKITGMAFRVPTPNVSVVDLTCRLQKPA 251
Query: 183 KYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAW 362
KYD+IKAAIK ASE MKGIL YT+++VVS DF GD +SSIFDA AGI L + FVKLV+W
Sbjct: 252 KYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAGIALNENFVKLVSW 311
Query: 363 YDNEYGYSCRVIDLIQHMSTKD 428
YDNE GYS RV+DL+ HM++K+
Sbjct: 312 YDNECGYSNRVVDLVCHMASKE 333
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 195 bits (496), Expect = 5e-50
Identities = 95/142 (66%), Positives = 113/142 (79%)
Frame = +3
Query: 3 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAA 182
KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+K A
Sbjct: 192 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA 251
Query: 183 KYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAW 362
KYD+IK +K A++ +KGILAYTE++VVS DF GD +SS FDA AGI L D FVKLV+W
Sbjct: 252 KYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSW 311
Query: 363 YDNEYGYSCRVIDLIQHMSTKD 428
YDNEYGYS RV+DL+ HM++K+
Sbjct: 312 YDNEYGYSNRVVDLMVHMASKE 333
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 194 bits (494), Expect = 9e-50
Identities = 94/142 (66%), Positives = 112/142 (78%)
Frame = +3
Query: 3 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAA 182
KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+KAA
Sbjct: 192 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAA 251
Query: 183 KYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAW 362
KYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L D FVKL++W
Sbjct: 252 KYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISW 311
Query: 363 YDNEYGYSCRVIDLIQHMSTKD 428
YDNE+GYS RV+DL+ HM++K+
Sbjct: 312 YDNEFGYSNRVVDLMAHMASKE 333
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 194 bits (493), Expect = 1e-49
Identities = 94/142 (66%), Positives = 112/142 (78%)
Frame = +3
Query: 3 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAA 182
KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+K A
Sbjct: 192 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA 251
Query: 183 KYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAW 362
KYD+IK +K A+E +KGIL YTE++VVS DF GD +SS FDA AGI L D FVKLV+W
Sbjct: 252 KYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSW 311
Query: 363 YDNEYGYSCRVIDLIQHMSTKD 428
YDNE+GYS RV+DL+ HM++K+
Sbjct: 312 YDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 193 bits (491), Expect = 2e-49
Identities = 94/142 (66%), Positives = 111/142 (78%)
Frame = +3
Query: 3 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAA 182
KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+K A
Sbjct: 181 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA 240
Query: 183 KYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAW 362
KYDEIK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L D FVKL++W
Sbjct: 241 KYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISW 300
Query: 363 YDNEYGYSCRVIDLIQHMSTKD 428
YDNE+GYS RV+DL+ HM++K+
Sbjct: 301 YDNEFGYSNRVVDLMVHMASKE 322
>sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, muscle (GAPDH)
Length = 334
Score = 192 bits (488), Expect = 4e-49
Identities = 92/142 (64%), Positives = 113/142 (79%)
Frame = +3
Query: 3 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAA 182
KLWR GRGAAQN+IP IPEL+GK+TGMAFRVP +VSV+DLTC+L+K A
Sbjct: 193 KLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANVSVLDLTCRLEKPA 252
Query: 183 KYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAW 362
KYD+IK +K ASE +KGIL YTE+EVVS DF G ++SSIFDA AGI+L DTFVKLV+W
Sbjct: 253 KYDDIKKVVKEASEGPLKGILGYTEDEVVSDDFNGSNHSSIFDAGAGIELNDTFVKLVSW 312
Query: 363 YDNEYGYSCRVIDLIQHMSTKD 428
YDNE+GYS RV+DL+ HM++K+
Sbjct: 313 YDNEFGYSERVVDLMAHMASKE 334
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 192 bits (488), Expect = 4e-49
Identities = 93/142 (65%), Positives = 112/142 (78%)
Frame = +3
Query: 3 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAA 182
KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+K A
Sbjct: 192 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA 251
Query: 183 KYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAW 362
KYD+IK +K A++ +KGIL YTE++VVS DF GD +SS FDA AGI L D FVKLV+W
Sbjct: 252 KYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSW 311
Query: 363 YDNEYGYSCRVIDLIQHMSTKD 428
YDNE+GYS RV+DL+ HM++K+
Sbjct: 312 YDNEFGYSNRVVDLMVHMASKE 333
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 192 bits (488), Expect = 4e-49
Identities = 93/142 (65%), Positives = 111/142 (78%)
Frame = +3
Query: 3 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAA 182
KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+K A
Sbjct: 192 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA 251
Query: 183 KYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAW 362
KYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L D FVKL++W
Sbjct: 252 KYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISW 311
Query: 363 YDNEYGYSCRVIDLIQHMSTKD 428
YDNE+GYS RV+DL+ HM++K+
Sbjct: 312 YDNEFGYSNRVVDLMVHMASKE 333
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 191 bits (485), Expect = 1e-48
Identities = 93/142 (65%), Positives = 111/142 (78%)
Frame = +3
Query: 3 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAA 182
KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+L+KAA
Sbjct: 192 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAA 251
Query: 183 KYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAW 362
KYD+IK +K ASE +KGIL YTE++VVS DF +SS FDA AGI L D FVKL++W
Sbjct: 252 KYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAGIALNDHFVKLISW 311
Query: 363 YDNEYGYSCRVIDLIQHMSTKD 428
YDNE+GYS RV+DL+ HM++K+
Sbjct: 312 YDNEFGYSNRVVDLMVHMASKE 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,392,768
Number of Sequences: 369166
Number of extensions: 1020894
Number of successful extensions: 2859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2788
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)