Planarian EST Database

Dr_sW_009_K21

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_009_K21
         (494 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P30397|ROAA_EUGGR  Ribosomal operon-associated A protein ...    30   2.4  

>sp|P30397|ROAA_EUGGR Ribosomal operon-associated A protein (RoaA)
          Length = 516

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
 Frame = +2

Query: 98  AYKIYNKHSIDIFFNYISHSYD-IVCSK*S*LFITFQRFTDRGMLQIFDLSSIFYYVQYF 274
           +YK+Y    ID F+ +    YD  +C K   + I+F  F+ RG++   +++S FY  + F
Sbjct: 233 SYKVYYLFYIDKFYFFFKFPYDFFICKK---IIISF--FSLRGIILNININS-FYRFETF 286

Query: 275 VITRNL*INYLMVYKINFNTYKNGILDSNLKYLDQVLMDLK 397
           V       N+ +   + F +  N +L  N K++    + LK
Sbjct: 287 V------FNFFIFDFLRFGS--NILLHINKKHIQFYKLSLK 319

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,163,214
Number of Sequences: 369166
Number of extensions: 825058
Number of successful extensions: 1241
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)