Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_K16
(258 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UPZ9|ICK_HUMAN Serine/threonine-protein kinase ICK (In... 29 2.9
sp|Q9JKV2|ICK_MOUSE Serine/threonine-protein kinase ICK (In... 29 2.9
sp|Q62726|ICK_RAT Serine/threonine-protein kinase ICK (Inte... 29 2.9
sp|P20793|MAK_RAT Serine/threonine-protein kinase MAK (Male... 29 3.8
sp|Q04859|MAK_MOUSE Serine/threonine-protein kinase MAK (Ma... 29 3.8
sp|Q8CPF0|MUTS_STAES DNA mismatch repair protein mutS >gi|7... 28 6.5
sp|P20794|MAK_HUMAN Serine/threonine-protein kinase MAK (Ma... 28 8.5
sp|Q8VIM5|MYCD_MOUSE Myocardin (SRF cofactor protein) (Basi... 28 8.5
sp|Q9XSL6|ADA28_MACFA ADAM 28 precursor (A disintegrin and ... 28 8.5
sp|Q9UKQ2|ADA28_HUMAN ADAM 28 precursor (A disintegrin and ... 28 8.5
>sp|Q9UPZ9|ICK_HUMAN Serine/threonine-protein kinase ICK (Intestinal cell kinase) (hICK)
(MAK-related kinase) (MRK) (Laryngeal cancer kinase 2)
(LCK2)
Length = 632
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = -3
Query: 169 EYYTSRN-----NEITTSVQILQVRGVSKRANWPRGARLA 65
E YT R +EI T +I QV G K+ +WP G +L+
Sbjct: 192 EVYTLRPLFPGASEIDTIFKICQVLGTPKKTDWPEGYQLS 231
>sp|Q9JKV2|ICK_MOUSE Serine/threonine-protein kinase ICK (Intestinal cell kinase) (mICK)
(MAK-related kinase) (MRK)
Length = 629
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = -3
Query: 169 EYYTSRN-----NEITTSVQILQVRGVSKRANWPRGARLA 65
E YT R +EI T +I QV G K+ +WP G +L+
Sbjct: 192 EVYTLRPLFPGASEIDTIFKICQVLGTPKKTDWPEGYQLS 231
>sp|Q62726|ICK_RAT Serine/threonine-protein kinase ICK (Intestinal cell kinase)
(MAK-related kinase) (MRK)
Length = 629
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = -3
Query: 169 EYYTSRN-----NEITTSVQILQVRGVSKRANWPRGARLA 65
E YT R +EI T +I QV G K+ +WP G +L+
Sbjct: 192 EVYTLRPLFPGASEIDTIFKICQVLGTPKKTDWPEGYQLS 231
>sp|P20793|MAK_RAT Serine/threonine-protein kinase MAK (Male germ cell-associated
kinase)
Length = 622
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = -3
Query: 169 EYYTSR-----NNEITTSVQILQVRGVSKRANWPRGARLA 65
E YT R +E+ +I QV G K+++WP G +LA
Sbjct: 192 ELYTFRPLFPGTSEVDEIFKICQVLGTPKKSDWPEGYQLA 231
>sp|Q04859|MAK_MOUSE Serine/threonine-protein kinase MAK (Male germ cell-associated
kinase) (Protein kinase RCK)
Length = 622
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = -3
Query: 169 EYYTSR-----NNEITTSVQILQVRGVSKRANWPRGARLA 65
E YT R +E+ +I QV G K+++WP G +LA
Sbjct: 192 ELYTFRPLFPGTSEVDEIFKICQVLGTPKKSDWPEGYQLA 231
>sp|Q8CPF0|MUTS_STAES DNA mismatch repair protein mutS
sp|Q5HPP5|MUTS_STAEQ DNA mismatch repair protein mutS
Length = 873
Score = 28.1 bits (61), Expect = 6.5
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = -3
Query: 223 QLRHLESITN*LETGSLD----EYYTSRNNEITTSVQILQVRG----VSKRANWPRGARL 68
Q R L I +E ++D +YY RN E+T S+++ +G + P GAR
Sbjct: 228 QKRDLSHIEEVIEYAAVDYMKMDYYAKRNLELTESIRLKSKKGTLLWLMDETKTPMGARR 287
Query: 67 AK 62
K
Sbjct: 288 LK 289
>sp|P20794|MAK_HUMAN Serine/threonine-protein kinase MAK (Male germ cell-associated
kinase)
Length = 623
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 148 NEITTSVQILQVRGVSKRANWPRGARLA 65
+E+ +I QV G K+++WP G +LA
Sbjct: 204 SEVDEIFKICQVLGTPKKSDWPEGYQLA 231
>sp|Q8VIM5|MYCD_MOUSE Myocardin (SRF cofactor protein) (Basic SAP coiled-coil
transcription activator 2)
Length = 935
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 155 AEQ*NHNISSDSAGARCFQTSKLATRRKIG*TSSV 51
A++ NH +SS S+ C Q + L + K+G T S+
Sbjct: 665 AQRENHGVSSPSSSQGCAQMTGLQSSDKVGPTFSI 699
>sp|Q9XSL6|ADA28_MACFA ADAM 28 precursor (A disintegrin and metalloproteinase domain 28)
(eMDC II)
Length = 776
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 214 HLESITN*LETGSLDEYYTSRNNEITTSVQIL 119
+L+ N L G + YY S EITTS QI+
Sbjct: 72 YLKKNKNLLAPGYTETYYNSTGKEITTSPQIM 103
>sp|Q9UKQ2|ADA28_HUMAN ADAM 28 precursor (A disintegrin and metalloproteinase domain 28)
(Metalloproteinase-like, disintegrin-like, and
cysteine-rich protein-L) (MDC-L) (eMDC II) (ADAM23)
Length = 775
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 214 HLESITN*LETGSLDEYYTSRNNEITTSVQIL 119
+L+ N L G + YY S EITTS QI+
Sbjct: 71 YLKKNKNLLAPGYTETYYNSTGKEITTSPQIM 102
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,174,795
Number of Sequences: 369166
Number of extensions: 462744
Number of successful extensions: 984
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)