Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_K10
(284 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8T3T0|SIXA1_MESMA Depressant insect toxin BmK ITa1 prec... 36 0.031
sp|P53971|YNC3_YEAST Hypothetical 108.5 kDa protein in UME3... 32 0.59
sp|O75095|EGFL3_HUMAN Multiple EGF-like-domain protein 3 pr... 32 0.59
sp|Q6J1T3|MT_SCYTO Metallothionein (MT) 31 0.77
sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-rela... 30 1.7
sp|P01525|NXB4_CERLA Neurotoxin B-IV 29 2.9
sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-rela... 29 3.8
sp|O08746|MATN2_MOUSE Matrilin-2 precursor 28 5.0
sp|P25128|MT_NOEBA Metallothionein (MT) 28 5.0
sp|O00339|MATN2_HUMAN Matrilin-2 precursor 28 5.0
>sp|Q8T3T0|SIXA1_MESMA Depressant insect toxin BmK ITa1 precursor
Length = 85
Score = 35.8 bits (81), Expect = 0.031
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = +1
Query: 1 FLVLLVAISCLLN-----QGSCEEENLCKQECTKTKDICMSKCGFYLKTCYAYCWYEYNN 165
FL+LL++ S L++ G N CK C + C +CG Y Y YCW
Sbjct: 4 FLLLLISASMLIDGLVNADGYIRGSNGCKVSCLWGNEGCNKECGAY-GASYGYCW----T 58
Query: 166 CQKAC*CIINMISSDKLFDSVTWTLQIN 249
AC C + L D TW + N
Sbjct: 59 WGLACWC-------EGLPDDKTWKSESN 79
>sp|P53971|YNC3_YEAST Hypothetical 108.5 kDa protein in UME3-HDA1 intergenic region
Length = 965
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 49 CEEENLCKQECTKTKDICMSKCGFYLKTCYAYC---WYEYNNCQKAC 180
C ++ + C +T C KCG L CY C + NCQK C
Sbjct: 558 CGKKTKVRTVCFQTDVSCGIKCGIPLSYCYHTCQKTCHLPGNCQKVC 604
>sp|O75095|EGFL3_HUMAN Multiple EGF-like-domain protein 3 precursor (Multiple epidermal
growth factor-like domains 6)
Length = 1229
Score = 31.6 bits (70), Expect = 0.59
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Frame = +1
Query: 49 CEEENLC----KQECTKTKDICMSKCGFYLKTCYAYCWYEY--NNCQKAC*CIINM 198
C EE C Q C K C K GF + C A C Y C +AC C + +
Sbjct: 545 CSEECQCVQPHTQSCDKRDGSCSCKAGFRGERCQAECELGYFGPGCWQACTCPVGV 600
>sp|Q6J1T3|MT_SCYTO Metallothionein (MT)
Length = 68
Score = 31.2 bits (69), Expect = 0.77
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 28 CLLNQGSCEEENLCKQECTKTKDIC-MSKCGFYLKTCYAYCWYEYNNCQKAC*C 186
C+ GSC EN C+ C+ + C SK G K+C + C NC C C
Sbjct: 7 CVCLDGSCSCENTCR--CSDCR--CPTSKAGRCQKSCCSCCPAGCTNCANGCVC 56
>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B precursor
(Low-density lipoprotein receptor-related protein-deleted
in tumor) (LRP-DIT)
Length = 4599
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 25 SCLLNQGSCEEENLCKQECTKTKDICMSKCGFYLK 129
SC LN G C + L E T+T CM G+YL+
Sbjct: 1837 SCQLNNGGCSQLCLPTSETTRT---CMCTVGYYLQ 1868
>sp|P01525|NXB4_CERLA Neurotoxin B-IV
Length = 55
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 67 CKQECTKTKDICMSKCGFYLKT---CYAYCWYEYNNCQKAC 180
C+ C K D+C+ G + C A+C + NNC+ C
Sbjct: 12 CENNCRKKYDLCIRCQGKWAGKRGKCAAHCIIQKNNCKGKC 52
>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B precursor
(Low-density lipoprotein receptor-related protein-deleted
in tumor) (LRP-DIT)
Length = 4599
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 25 SCLLNQGSCEEENLCKQECTKTKDICMSKCGFYLK 129
SC +N G C + L E T+T CM G+YL+
Sbjct: 1837 SCQVNNGGCSQLCLPTSETTRT---CMCTVGYYLQ 1868
>sp|O08746|MATN2_MOUSE Matrilin-2 precursor
Length = 956
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 15/63 (23%)
Frame = +1
Query: 37 NQGSCEEENLCKQECTKTKDICMSKCGFYLKTCYA---------------YCWYEYNNCQ 171
+Q +C ++LC E + +C++ G ++ CY+ YC E + C+
Sbjct: 273 DQKTCRIQDLCATEDHGCEQLCVNMLGSFVCQCYSGYTLAEDGKRCTAMDYCASENHGCE 332
Query: 172 KAC 180
C
Sbjct: 333 HEC 335
>sp|P25128|MT_NOEBA Metallothionein (MT)
Length = 60
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +1
Query: 43 GSCEEENLCKQ---ECTKTKDICMSKCGFYLKTCYAYCWYEYNNCQKAC 180
G+C CK +CT K C S C C + C + N+C +C
Sbjct: 10 GTCNCGATCKCTNCQCTTCKKSCCSCCPSGCSKCASGCVCKGNSCDSSC 58
>sp|O00339|MATN2_HUMAN Matrilin-2 precursor
Length = 956
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 15/63 (23%)
Frame = +1
Query: 37 NQGSCEEENLCKQECTKTKDICMSKCGFYLKTCYA---------------YCWYEYNNCQ 171
+Q +C ++LC E + +C++ G ++ CY+ YC E + C+
Sbjct: 273 DQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCE 332
Query: 172 KAC 180
C
Sbjct: 333 HEC 335
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +1
Query: 52 EEENLCKQECTKTKD--ICMSKCGFY----LKTC--YAYCWYEYNNCQKAC 180
++++ C+Q C T+D +C GF LKTC YC + C+ +C
Sbjct: 449 QQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSC 499
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,761,230
Number of Sequences: 369166
Number of extensions: 491531
Number of successful extensions: 1608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1607
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)