Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_K05
(784 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94529|GS1_DROME GS1-like protein 162 1e-39
sp|Q08623|HDD1A_HUMAN Haloacid dehalogenase-like hydrolase ... 131 2e-30
sp|O14165|YDX1_SCHPO Hypothetical protein C4C5.01 in chromo... 100 4e-21
sp|Q9X0Y1|P1254_THEMA Phosphorylated carbohydrates phosphat... 92 2e-18
sp|P77475|YQAB_ECOLI Phosphatase yqaB 72 2e-12
sp|P54607|YHCW_BACSU Hypothetical protein yhcW 69 1e-11
sp|P71447|PGMB_LACLA Beta-phosphoglucomutase (Beta-PGM) 64 6e-10
sp|O06995|PGMB_BACSU Putative beta-phosphoglucomutase (Beta... 57 7e-08
sp|Q8ENK3|PPAX_OCEIH Pyrophosphatase ppaX 54 6e-07
sp|P95649|CBBY_RHOSH Protein cbbY 53 8e-07
>sp|Q94529|GS1_DROME GS1-like protein
Length = 231
Score = 162 bits (410), Expect = 1e-39
Identities = 92/212 (43%), Positives = 120/212 (56%), Gaps = 1/212 (0%)
Frame = -2
Query: 687 ITHCIFDLDGLILDTETLYTKNTQRIFDDYGVQFKREWKIKIMGNTPKDAAEFLINESKI 508
+THC+FD+DGL+LDTE LYT T+ I + YG + E K ++MG + A F++ ++
Sbjct: 9 VTHCVFDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQVMGLQTEPLARFMVEHYEL 68
Query: 507 DLKPEEFTRLLYELMEIDFKNCQVLPGVHNLLNELKRKNIPMCIATGSSQDSFNSKMSIH 328
+ EE+ R EI +N Q++PG LL L +P C+AT S D K + H
Sbjct: 69 PMSWEEYARQQRANTEILMRNAQLMPGAERLLRHLHANKVPFCLATSSGADMVELKTAQH 128
Query: 327 DDLKPYFTHVVCGGSDPEVQRSKPFPDIFIEAMKRFNDPNITSDQVLVFEDSRNGVEAAL 148
+L F H VCG SD EV KP PDIF+ A RF P SD LVFEDS NGV AA
Sbjct: 129 RELFSLFNHKVCGSSDKEVVNGKPAPDIFLVAAGRFGVPPKPSD-CLVFEDSPNGVTAAN 187
Query: 147 NANMQVIWVPDIRDVDGCPDGVTR-LASLTEF 55
+A MQV+ VPD R T+ LASL +F
Sbjct: 188 SAGMQVVMVPDPRLSQEKTSHATQVLASLADF 219
>sp|Q08623|HDD1A_HUMAN Haloacid dehalogenase-like hydrolase domain containing protein 1A
(GS1 protein)
Length = 214
Score = 131 bits (330), Expect = 2e-30
Identities = 73/184 (39%), Positives = 106/184 (57%)
Frame = -2
Query: 666 LDGLILDTETLYTKNTQRIFDDYGVQFKREWKIKIMGNTPKDAAEFLINESKIDLKPEEF 487
+DGL+LDTE LY+ Q I + Y ++ + K +MG +AA+ +I+ ++ + EE
Sbjct: 1 MDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEEL 60
Query: 486 TRLLYELMEIDFKNCQVLPGVHNLLNELKRKNIPMCIATGSSQDSFNSKMSIHDDLKPYF 307
++ F ++PG L+ L++ IP +AT S SF+ K S H + F
Sbjct: 61 VEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLF 120
Query: 306 THVVCGGSDPEVQRSKPFPDIFIEAMKRFNDPNITSDQVLVFEDSRNGVEAALNANMQVI 127
+H+V G DPEVQ KP PDIF+ KRF+ P ++ LVFED+ NGVEAAL A MQV+
Sbjct: 121 SHIVL-GDDPEVQHGKPDPDIFLACAKRFSPPP-AMEKCLVFEDAPNGVEAALAAGMQVV 178
Query: 126 WVPD 115
VPD
Sbjct: 179 MVPD 182
>sp|O14165|YDX1_SCHPO Hypothetical protein C4C5.01 in chromosome I
Length = 246
Score = 100 bits (249), Expect = 4e-21
Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 18/227 (7%)
Frame = -2
Query: 678 CIFDLDGLILDTETLYTKNTQRIFDDYGVQ-FKREWKIKIMGNTPKDAAEFLINESKIDL 502
C+FD+DGL++D+ET+YTK T I D YG K ++MG AA+ +I+ S I +
Sbjct: 11 CLFDMDGLLVDSETIYTKTTNLILDRYGKDPLPISVKAQMMGRPGSAAAKVVIDWSNIPM 70
Query: 501 KPEEFTRLLYELMEIDFKNCQVLPGVHNLLNELKRKNIPMCIATGSSQDSFNSKMSIHDD 322
P++F + + + + +PG +L+N L I + + T K +
Sbjct: 71 TPQQFVDEQQVIRAKFWSSLKPMPGAESLINNLSNHGIDIGVCT---HPYAIIKTAHLKH 127
Query: 321 LKPYFTHVVCGGSDPEVQ--RSKPFPDIFIEAMKRFNDPN-------ITSDQVLVFEDSR 169
+ F V G +P + R KPFPDI+++ + N+ +T Q + FEDS
Sbjct: 128 IFEKFGKNVITGDNPSIAPGRGKPFPDIWLKVLNLINESRKQRGLKALTPSQCIAFEDSI 187
Query: 168 NGVEAALNANMQVIWVPD--IRDVDG------CPDGVTRLASLTEFD 52
GV++A A M VIWVPD I+++ G L SL+EFD
Sbjct: 188 PGVKSAKAAGMHVIWVPDAAIKNLVGDQLNEIVDSQCETLPSLSEFD 234
>sp|Q9X0Y1|P1254_THEMA Phosphorylated carbohydrates phosphatase TM1254
Length = 216
Score = 91.7 bits (226), Expect = 2e-18
Identities = 58/185 (31%), Positives = 103/185 (55%), Gaps = 1/185 (0%)
Frame = -2
Query: 675 IFDLDGLILDTETLYTKNTQRIFDDYGVQFKREWKIKIMGNTPKDAAEFLINESKIDLKP 496
IFD+DG+++DTE LY + +R+ + YG + + +IMG ++ L+ +I
Sbjct: 5 IFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALEIKDSL 64
Query: 495 EEFTRLLYELMEIDFKN-CQVLPGVHNLLNELKRKNIPMCIATGSSQDSFNSKMSIHDDL 319
E F + ++E + F + PGV L +K K I + +AT + Q ++ DL
Sbjct: 65 ENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQREALERLR-RLDL 123
Query: 318 KPYFTHVVCGGSDPEVQRSKPFPDIFIEAMKRFNDPNITSDQVLVFEDSRNGVEAALNAN 139
+ YF +V G +V+ KP P+I++ ++R N+ ++V+VFEDS++GVEAA +A
Sbjct: 124 EKYFDVMVFG---DQVKNGKPDPEIYLLVLERL---NVVPEKVVVFEDSKSGVEAAKSAG 177
Query: 138 MQVIW 124
++ I+
Sbjct: 178 IERIY 182
>sp|P77475|YQAB_ECOLI Phosphatase yqaB
Length = 188
Score = 71.6 bits (174), Expect = 2e-12
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 1/184 (0%)
Frame = -2
Query: 675 IFDLDGLILDTETLYTKNTQRIFDDYGVQFKREWKIKIMGNTPKDAAEFLINESKIDLKP 496
IFD+DG ILDTE + K + + YG+Q+ + I + G+ A+ +I ++ DL P
Sbjct: 9 IFDMDGTILDTEPTHRKAWREVLGHYGLQYDIQAMIALNGSPTWRIAQAIIELNQADLDP 68
Query: 495 EEFTRLLYE-LMEIDFKNCQVLPGVHNLLNELKRKNIPMCIATGSSQDSFNSKMSIHDDL 319
R E + + + + LP V + + R+ PM + TG S+ + + H L
Sbjct: 69 HALAREKTEAVRSMLLDSVEPLPLVDVVKSWHGRR--PMAVGTG-SESAIAEALLAHLGL 125
Query: 318 KPYFTHVVCGGSDPEVQRSKPFPDIFIEAMKRFNDPNITSDQVLVFEDSRNGVEAALNAN 139
+ YF VV V+ KP PD F+ +R + Q +VFED+ G++AA A
Sbjct: 126 RHYFDAVVAA---DHVKHHKPAPDTFLLCAQRM---GVQPTQCVVFEDADFGIQAARAAG 179
Query: 138 MQVI 127
M +
Sbjct: 180 MDAV 183
>sp|P54607|YHCW_BACSU Hypothetical protein yhcW
Length = 220
Score = 68.9 bits (167), Expect = 1e-11
Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 5/217 (2%)
Frame = -2
Query: 675 IFDLDGLILDTETLYTKNTQRIFDDYGVQFKREWKIKIMGNTPK-DAAEFLINESKIDLK 499
IFD DGLILDTET + Q IF+++G K++G E+L + L
Sbjct: 6 IFDFDGLILDTETHEYEVLQEIFEEHGSVLPLSVWGKVIGTAAGFRPFEYLEEQIGKKLN 65
Query: 498 PEEFTRLLYELMEIDFKNCQVLPGVHNLLNELKRKNIPMCIATGSSQ---DSFNSKMSIH 328
EE T+L E ++ + PGV LN K + + +A+ S ++ +
Sbjct: 66 HEELTQLRRERFAKRMESEKARPGVEAYLNAAKDLGLKIGLASSSDYKWVSGHLKQIGLF 125
Query: 327 DDLKPYFTHVVCGGSDPEVQRSKPFPDIFIEAMKRFNDPNITSDQVLVFEDSRNGVEAAL 148
DD + T +V+ KP P++++ A K ++ + L FEDS NG AA
Sbjct: 126 DDFEVIQT-------ADDVEEVKPNPELYLLAAKNL---GVSPAECLAFEDSVNGSIAAK 175
Query: 147 NANMQVIWVPD-IRDVDGCPDGVTRLASLTEFDFAIL 40
A M+ + VP+ + D RL S+ E + A+L
Sbjct: 176 RAGMKCVIVPNKVTGTLMFEDYDHRLESMAEMELALL 212
>sp|P71447|PGMB_LACLA Beta-phosphoglucomutase (Beta-PGM)
Length = 221
Score = 63.5 bits (153), Expect = 6e-10
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 9/209 (4%)
Frame = -2
Query: 675 IFDLDGLILDTETLYTKNTQRIFDDYGVQ-FKREWKIKIMGNTPKDAAEFLINESKIDLK 499
+FDLDG+I DT + + + + ++ G+ R++ ++ G + +D+ + +++ + +
Sbjct: 6 LFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKVS 65
Query: 498 PEEFTRLL------YELMEIDFKNCQVLPGVHNLLNELKRKNIPMCIATGSSQDSF-NSK 340
EEF L Y M D V PG+ LL +L+ I + +A+ S F K
Sbjct: 66 AEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLEK 125
Query: 339 MSIHDDLKPYFTHVVCGGSDP-EVQRSKPFPDIFIEAMKRFNDPNITSDQVLVFEDSRNG 163
M +L YF + +DP EV SKP PDIFI A + + + + EDS+ G
Sbjct: 126 M----NLTGYFDAI----ADPAEVAASKPAPDIFIAAA---HAVGVAPSESIGLEDSQAG 174
Query: 162 VEAALNANMQVIWVPDIRDVDGCPDGVTR 76
++A I+D P GV R
Sbjct: 175 IQA-------------IKDSGALPIGVGR 190
>sp|O06995|PGMB_BACSU Putative beta-phosphoglucomutase (Beta-PGM)
Length = 226
Score = 56.6 bits (135), Expect = 7e-08
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 15/220 (6%)
Frame = -2
Query: 675 IFDLDGLILDTETLYTKNTQRIFDDYGVQFKREWKIKIMGNTPKDAAEFLI--------- 523
IFDLDG+I DT + + I + + F R+ ++ G + +++ E ++
Sbjct: 5 IFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDMNERLKGISREESLESILIFGGAETKY 64
Query: 522 -NESKIDL---KPEEFTRLLYELMEIDFKNCQVLPGVHNLLNELKRKNIPMCIATGS-SQ 358
N K +L K ++ L+ +L D +LPG+ LL +LK +NI + +A+ S +
Sbjct: 65 TNAEKQELMHRKNRDYQMLISKLTPED-----LLPGIGRLLCQLKNENIKIGLASSSRNA 119
Query: 357 DSFNSKMSIHDDLKPYFTHVVCGGSDP-EVQRSKPFPDIFIEAMKRFNDPNITSDQVLVF 181
+++I DD H + DP + + KP PDIF+ A +++
Sbjct: 120 PKILRRLAIIDDF-----HAIV---DPTTLAKGKPDPDIFLTAAAML---DVSPADCAAI 168
Query: 180 EDSRNGVEAALNANMQVIWVPDIRDVDGCPDGVTRLASLT 61
ED+ G+ A +A M + V + + G V + + LT
Sbjct: 169 EDAEAGISAIKSAGMFAVGVGQGQPMLGADLVVRQTSDLT 208
>sp|Q8ENK3|PPAX_OCEIH Pyrophosphatase ppaX
Length = 214
Score = 53.5 bits (127), Expect = 6e-07
Identities = 45/187 (24%), Positives = 86/187 (45%)
Frame = -2
Query: 693 MPITHCIFDLDGLILDTETLYTKNTQRIFDDYGVQFKREWKIKIMGNTPKDAAEFLINES 514
M I +FDLDG ++DT TL + + F +Y + F E +K G D I+E+
Sbjct: 1 MSIRTILFDLDGTLIDTNTLIKASFEHTFKEYNLNFSNEEILKFNGPPLVDTFN-KIDET 59
Query: 513 KIDLKPEEFTRLLYELMEIDFKNCQVLPGVHNLLNELKRKNIPMCIATGSSQDSFNSKMS 334
K D F + + E D P V++ L EL+ +NI + I + + + + +
Sbjct: 60 KADRMITTFRE--HNIREHD-NFVTAFPHVYDTLEELQNRNISLGIVSTKMRHTVHMGLE 116
Query: 333 IHDDLKPYFTHVVCGGSDPEVQRSKPFPDIFIEAMKRFNDPNITSDQVLVFEDSRNGVEA 154
+ + +F+ ++ + +V +KP P+ AM++ + L+ D+ + + +
Sbjct: 117 L-TGISKFFSTII---TYDDVTHAKPHPEPVQMAMQKL---GAHPEHTLMVGDNHHDIVS 169
Query: 153 ALNANMQ 133
AN+Q
Sbjct: 170 GQRANVQ 176
>sp|P95649|CBBY_RHOSH Protein cbbY
Length = 230
Score = 53.1 bits (126), Expect = 8e-07
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 16/202 (7%)
Frame = -2
Query: 675 IFDLDGLILDTETLYTKNTQRIFDDYGVQF---KREWKIKIMGNTPKDAAEFLINESKID 505
+FD+DG + +TE L+ + F GV + + E++ + K+ + K D
Sbjct: 6 LFDVDGTLAETEELHRRAFNETFAALGVDWFWDREEYRELLTTTGGKERIARFLRHQKGD 65
Query: 504 -----------LKPEEFTRLLYELMEIDFKNCQVLPGVHNLLNELKRKNIPMCIATGSSQ 358
K E F L+ E + PG+ +L+ E KR I + +AT +S
Sbjct: 66 PAPLPIADIHRAKTERFVALMAE------GEIALRPGIADLIAEAKRAGIRLAVATTTSL 119
Query: 357 DSFNS--KMSIHDDLKPYFTHVVCGGSDPEVQRSKPFPDIFIEAMKRFNDPNITSDQVLV 184
+ + + + F + G V KP PDI+ A++ + P ++ +
Sbjct: 120 PNVEALCRACFGHPAREIFDVIAAGDM---VAEKKPSPDIYRLALRELDVP---PERAVA 173
Query: 183 FEDSRNGVEAALNANMQVIWVP 118
EDS NG+ AA A ++ I P
Sbjct: 174 LEDSLNGLRAAKGAGLRCIVSP 195
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,087,716
Number of Sequences: 369166
Number of extensions: 1720310
Number of successful extensions: 4125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4088
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)