Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J18-2
(191 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VNV3|DDX1_DROME ATP-dependent helicase DDX1 (DEAD-box ... 95 4e-20
sp|Q92499|DDX1_HUMAN ATP-dependent helicase DDX1 (DEAD-box ... 85 5e-17
sp|Q91VR5|DDX1_MOUSE ATP-dependent helicase DDX1 (DEAD-box ... 85 5e-17
sp|Q641Y8|DDX1_RAT ATP-dependent helicase DDX1 (DEAD-box pr... 85 5e-17
sp|Q00839|HNRPU_HUMAN Heterogenous nuclear ribonucleoprotei... 38 0.008
sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 (Cardiac muscle-t... 32 0.46
sp|P30957|RYR2_RABIT Ryanodine receptor 2 (Cardiac muscle-t... 32 0.46
sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 (Silencing ... 29 3.0
sp|Q5KU05|PALA_ASPOR pH-response regulator protein palA/RIM20 29 3.0
sp|P22293|SUS_DROME Suppressor of sable protein 29 3.9
>sp|Q9VNV3|DDX1_DROME ATP-dependent helicase DDX1 (DEAD-box protein 1)
Length = 727
Score = 95.1 bits (235), Expect = 4e-20
Identities = 41/63 (65%), Positives = 49/63 (77%)
Frame = +2
Query: 2 TDDGLCRVGWSTNSASLELGTCPNGFGFGGTGKKSNNKKFDSYGESFANGDKIGNCIDFE 181
TD+GLCRVGWST A+L+LGTC GFGFGGTGKKSNN++FD YGE+F D IG +D +
Sbjct: 139 TDEGLCRVGWSTQQANLDLGTCRMGFGFGGTGKKSNNRQFDDYGEAFGKADVIGCLLDLK 198
Query: 182 RNE 190
E
Sbjct: 199 NQE 201
>sp|Q92499|DDX1_HUMAN ATP-dependent helicase DDX1 (DEAD-box protein 1) (DEAD-box
protein-retinoblastoma) (DBP-RB)
Length = 740
Score = 85.1 bits (209), Expect = 5e-17
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = +2
Query: 5 DDGLCRVGWSTNSASLELGTCPNGFGFGGTGKKSNNKKFDSYGESFANGDKIGNCIDFER 184
D GLCRVGWST ASL+LGT GFGFGGTGKKS+NK+FD+YGE F D IG +D ++
Sbjct: 141 DQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK 200
>sp|Q91VR5|DDX1_MOUSE ATP-dependent helicase DDX1 (DEAD-box protein 1)
Length = 740
Score = 85.1 bits (209), Expect = 5e-17
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = +2
Query: 5 DDGLCRVGWSTNSASLELGTCPNGFGFGGTGKKSNNKKFDSYGESFANGDKIGNCIDFER 184
D GLCRVGWST ASL+LGT GFGFGGTGKKS+NK+FD+YGE F D IG +D ++
Sbjct: 141 DQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK 200
>sp|Q641Y8|DDX1_RAT ATP-dependent helicase DDX1 (DEAD-box protein 1)
Length = 740
Score = 85.1 bits (209), Expect = 5e-17
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = +2
Query: 5 DDGLCRVGWSTNSASLELGTCPNGFGFGGTGKKSNNKKFDSYGESFANGDKIGNCIDFER 184
D GLCRVGWST ASL+LGT GFGFGGTGKKS+NK+FD+YGE F D IG +D ++
Sbjct: 141 DQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK 200
>sp|Q00839|HNRPU_HUMAN Heterogenous nuclear ribonucleoprotein U (hnRNP U) (Scaffold
attachment factor A) (SAF-A) (pp120)
Length = 824
Score = 37.7 bits (86), Expect = 0.008
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 20 RVGWSTNSASLELGTCPNGFGFGGTGKKSNNKKFDSYGESFANGDKIGNCIDFERNE 190
R+GWS ++ + LG +G+ G K+ N + + YGE F D I +FE +E
Sbjct: 359 RIGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDE 415
>sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 (Cardiac muscle-type ryanodine receptor) (RyR2)
(RYR-2) (Cardiac muscle ryanodine receptor-calcium
release channel) (hRYR-2)
Length = 4967
Score = 32.0 bits (71), Expect = 0.46
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 11 GLCRVGWSTNSAS--LELGTCPNGFGFGGTGKKSNNKKFDSYGESFANGDKIGNCIDFER 184
G RVGWS ELG+ F F G + ++ + YG S+ GD +G +D
Sbjct: 1111 GDMRVGWSRPGCQPDQELGSDERAFAFDGFKAQRWHQGNEHYGRSWQAGDVVGCMVDMNE 1170
Query: 185 N 187
+
Sbjct: 1171 H 1171
>sp|P30957|RYR2_RABIT Ryanodine receptor 2 (Cardiac muscle-type ryanodine receptor) (RyR2)
(RYR-2) (Cardiac muscle ryanodine receptor-calcium
release channel)
Length = 4969
Score = 32.0 bits (71), Expect = 0.46
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 11 GLCRVGWSTNSAS--LELGTCPNGFGFGGTGKKSNNKKFDSYGESFANGDKIGNCIDFER 184
G RVGWS ELG+ F F G + ++ + YG S+ GD +G +D
Sbjct: 1111 GDMRVGWSRPGCQPDQELGSDERAFAFDGFKAQRWHQGNEHYGRSWQAGDVVGCMVDMNE 1170
Query: 185 N 187
+
Sbjct: 1171 H 1171
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 (Silencing defective protein 3)
Length = 1002
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 GWSTNSASLELGTCPNGFGFGGTGKK-SNNKKFDSYGESFA 145
GW+ N E C +G+ GG+G++ N KF++ G+ A
Sbjct: 951 GWNNNGGKNEKEECCDGWKDGGSGEEIKNGGKFETRGDFVA 991
>sp|Q5KU05|PALA_ASPOR pH-response regulator protein palA/RIM20
Length = 828
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 93 VPPNPNPFGHVPNSNEALLVDHPTRHN 13
+PP P P H P +E L PTR N
Sbjct: 769 LPPQPQPVQHQPPRDEPLTAPQPTRAN 795
>sp|P22293|SUS_DROME Suppressor of sable protein
Length = 1325
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 29 WSTNSASLELGTCPNGFGFGGTGKKSNNKKFDSYGESFANGDKIGN 166
W + S G G G GG G +++ +DSY + NG + N
Sbjct: 224 WDMDDGSAATGAA--GLGAGGGGGYNSHSSYDSYSDEETNGPGLMN 267
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,311,701
Number of Sequences: 369166
Number of extensions: 447495
Number of successful extensions: 1828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1827
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1732899140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)