Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J18-1
(476 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8KAH7|RL22_CHLTE 50S ribosomal protein L22 32 0.58
sp|Q89A36|PTM3C_BUCBP PTS system mannitol-specific EIICBA c... 32 0.75
sp|P49655|IRK10_RAT ATP-sensitive inward rectifier potassiu... 31 1.3
sp|Q19981|YC81_CAEEL Hypothetical protein F33C8.1 in chromo... 31 1.3
sp|P41695|BUB1_YEAST Checkpoint serine/threonine-protein ki... 30 2.9
sp|P78508|IRK10_HUMAN ATP-sensitive inward rectifier potass... 30 3.7
sp|Q9JM63|IRK10_MOUSE ATP-sensitive inward rectifier potass... 30 3.7
sp|Q9NY15|STAB1_HUMAN Stabilin-1 precursor (FEEL-1 protein)... 29 6.4
>sp|Q8KAH7|RL22_CHLTE 50S ribosomal protein L22
Length = 119
Score = 32.3 bits (72), Expect = 0.58
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 165 AILANLRRNLSFITEVLGKTVVANVTESNKTNRINKANIAY*DIFADRGPS-KRVHLSPY 341
AIL N ++ S V K+ VAN ++ N R+N + IF D GPS KR+ +P
Sbjct: 34 AILHNSTKSASRNVMVTLKSAVANWSQLNPDERLNDNELFVKAIFVDEGPSLKRLLPAPM 93
Query: 342 --QYKLHKQA 365
Y++ K++
Sbjct: 94 GRAYRIRKRS 103
>sp|Q89A36|PTM3C_BUCBP PTS system mannitol-specific EIICBA component (EIICBA-Mtl)
(EII-Mtl) [Includes: Mannitol permease IIC component
(PTS system mannitol-specific EIIC component);
Mannitol-specific phosphotransferase enzyme IIB
component (PTS system mannitol-specific EIIB component);
Mannitol-specific phosphotransferase enzyme IIA
component (PTS system mannitol-specific EIIA component)]
Length = 640
Score = 32.0 bits (71), Expect = 0.75
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +3
Query: 87 KNN*LI-SKFQKTSSCIGSVLQLGLCLAILANLRRNLSFITEV-LGKTVVANVTESNKTN 260
K+N LI S FQK +CI S L C+ RN+ F + +G + VA NK +
Sbjct: 352 KDNFLINSSFQKNRTCIKSSLDSHKCI-------RNIIFACDAGMGSSAVAAGILRNKIH 404
Query: 261 RINKANIAY*DIFADRGPSKRVHLSPYQYKLHKQA 365
+N NI + D P+ V L Y L +A
Sbjct: 405 DLNIFNITVSNAAIDSIPNFGVDLIITHYSLTDRA 439
>sp|P49655|IRK10_RAT ATP-sensitive inward rectifier potassium channel 10 (Potassium
channel, inwardly rectifying subfamily J member 10)
(ATP-sensitive inward rectifier potassium channel KAB-2)
(Kir4.1) (BIR10) (Brain-specific inwardly rectifying
K(+) channel 1) (BIRK1)
Length = 379
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 156 LCLAI-LANLRRNLSFITEVLGKTVVANVTESNKTNRINKANIAY 287
LCL I +AN+R++L +V GK + + T+ + R+N+ N+ +
Sbjct: 194 LCLMIRVANMRKSLLIGCQVTGKLLQTHQTKEGENIRLNQVNVTF 238
>sp|Q19981|YC81_CAEEL Hypothetical protein F33C8.1 in chromosome X precursor
Length = 1271
Score = 31.2 bits (69), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 421 CHHGICIWTEATPFIPSKKACLCNLYWYGDRC 326
C++G+C+ KAC+C+ WYG +C
Sbjct: 70 CYNGVCL----------NKACVCSKGWYGSQC 91
>sp|P41695|BUB1_YEAST Checkpoint serine/threonine-protein kinase BUB1
Length = 1021
Score = 30.0 bits (66), Expect = 2.9
Identities = 11/35 (31%), Positives = 26/35 (74%)
Frame = -3
Query: 168 LLDKGLIVKLTLYMKKFSEIWKSINYFLEITLVVE 64
+ +KG+ KL+L+ ++FS++ ++ +FLE +++E
Sbjct: 133 MFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 167
>sp|P78508|IRK10_HUMAN ATP-sensitive inward rectifier potassium channel 10 (Potassium
channel, inwardly rectifying subfamily J member 10)
(Inward rectifier K(+) channel Kir1.2) (ATP-dependent
inwardly rectifying potassium channel Kir4.1)
Length = 379
Score = 29.6 bits (65), Expect = 3.7
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 159 CLAI-LANLRRNLSFITEVLGKTVVANVTESNKTNRINKANIAY 287
CL I +AN+R++L +V GK + + T+ + R+N+ N+ +
Sbjct: 195 CLMIRVANMRKSLLIGCQVTGKLLQTHQTKEGENIRLNQVNVTF 238
>sp|Q9JM63|IRK10_MOUSE ATP-sensitive inward rectifier potassium channel 10 (Potassium
channel, inwardly rectifying subfamily J member 10)
(Inward rectifier K(+) channel Kir4.1)
Length = 379
Score = 29.6 bits (65), Expect = 3.7
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 159 CLAI-LANLRRNLSFITEVLGKTVVANVTESNKTNRINKANIAY 287
CL I +AN+R++L +V GK + + T+ + R+N+ N+ +
Sbjct: 195 CLMIRVANMRKSLLIGCQVTGKLLQTHQTKEGENIRLNQVNVTF 238
>sp|Q9NY15|STAB1_HUMAN Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)
Length = 2570
Score = 28.9 bits (63), Expect = 6.4
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 439 DLGEILCHHGIC-IWTEATPFIPSKKACLCNLYWYGD---RCTLFDGPLSAN 296
++ L HHG C I E P P + +C C + GD C L D P S N
Sbjct: 1497 EINSCLIHHGGCHIHAECIPTGPQQVSCSCREGYSGDGIRTCELLD-PCSKN 1547
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,581,030
Number of Sequences: 369166
Number of extensions: 934688
Number of successful extensions: 2312
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2312
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)