Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J16
(874 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC) 199 6e-51
sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC) 195 2e-49
sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC) 195 2e-49
sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC) 194 3e-49
sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC) 194 3e-49
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xO... 194 3e-49
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xO... 192 1e-48
sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC) 189 1e-47
sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC) 180 5e-45
sp|P40807|DCOR1_DROME Ornithine decarboxylase 1 (ODC) 178 2e-44
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC)
Length = 461
Score = 199 bits (507), Expect = 6e-51
Identities = 109/240 (45%), Positives = 146/240 (60%)
Frame = +1
Query: 4 PFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVIDSMSYNTTQAATNIIFANPFKFKK 183
PFYAVKC ++S L +G GFDCASK EI+ V A +I+ANP K
Sbjct: 64 PFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLV-----QGLGVPAERVIYANPCKQVS 118
Query: 184 DILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLRLSPQRVYDATCILGNKFGADADEV 363
I YA+ GV +TFD+E EL+K+++ P +LVLR++ A C L KFGA
Sbjct: 119 QIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDS-KAVCRLSVKFGATLKTS 177
Query: 364 PFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGG 543
LL+RAKEL+++V+GVSFHVGSGC + D F + V V ++A ++GF +LDIGGG
Sbjct: 178 RLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGG 237
Query: 544 FPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVI 723
FPG +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+TL +I
Sbjct: 238 FPGSEDT------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNII 291
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC)
Length = 461
Score = 195 bits (495), Expect = 2e-49
Identities = 106/240 (44%), Positives = 144/240 (60%)
Frame = +1
Query: 4 PFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVIDSMSYNTTQAATNIIFANPFKFKK 183
PFYAVKC ++ L +G GFDCASK EI+ V + II+ANP K
Sbjct: 64 PFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLV-----QSLGVPPERIIYANPCKQVS 118
Query: 184 DILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLRLSPQRVYDATCILGNKFGADADEV 363
I YA+ GV +TFD+E EL+K+++ P +LVLR++ A C L KFGA
Sbjct: 119 QIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDS-KAVCRLSVKFGATLKTS 177
Query: 364 PFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGG 543
LL+RAKEL ++V+GVSFHVGSGC + + F + + V ++ ++GF +LDIGGG
Sbjct: 178 RLLLERAKELDIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGG 237
Query: 544 FPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVI 723
FPG V +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+TL +I
Sbjct: 238 FPGSEDV------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNII 291
>sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC)
Length = 461
Score = 195 bits (495), Expect = 2e-49
Identities = 107/240 (44%), Positives = 144/240 (60%)
Frame = +1
Query: 4 PFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVIDSMSYNTTQAATNIIFANPFKFKK 183
PFYAVKC ++S L +G GFDCASK EI+ V II+ANP K
Sbjct: 64 PFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLV-----QGLGVPPERIIYANPCKQVS 118
Query: 184 DILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLRLSPQRVYDATCILGNKFGADADEV 363
I YA+ GV +TFD+E EL+K+++ P +LVLR++ A C L KFGA
Sbjct: 119 QIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDS-KAVCRLSVKFGATLKTS 177
Query: 364 PFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGG 543
LL+RAKEL+++V+GVSFHVGSGC + + F + V V ++ ++GF +LDIGGG
Sbjct: 178 RLLLERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMGTEVGFSMYLLDIGGG 237
Query: 544 FPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVI 723
FPG +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+TL +I
Sbjct: 238 FPGSEDT------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNII 291
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC)
Length = 461
Score = 194 bits (493), Expect = 3e-49
Identities = 107/240 (44%), Positives = 144/240 (60%)
Frame = +1
Query: 4 PFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVIDSMSYNTTQAATNIIFANPFKFKK 183
PFYAVKC ++ L G GFDCASK EI+ V + II+ANP K
Sbjct: 64 PFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLV-----QSLGVPPERIIYANPCKQVS 118
Query: 184 DILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLRLSPQRVYDATCILGNKFGADADEV 363
I YA+ GV +TFD+E EL+K+++ P +LVLR++ A C L KFGA
Sbjct: 119 QIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDS-KAVCRLSVKFGATLRTS 177
Query: 364 PFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGG 543
LL+RAKEL+++VVGVSFHVGSGC + + F + + V ++ ++GF +LDIGGG
Sbjct: 178 RLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGG 237
Query: 544 FPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVI 723
FPG V +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+TL +I
Sbjct: 238 FPGSEDV------KLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNII 291
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC)
Length = 461
Score = 194 bits (493), Expect = 3e-49
Identities = 107/240 (44%), Positives = 144/240 (60%)
Frame = +1
Query: 4 PFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVIDSMSYNTTQAATNIIFANPFKFKK 183
PFYAVKC ++S L G GFDCASK EI+ V II+ANP K
Sbjct: 64 PFYAVKCNDSRAIVSTLAATGTGFDCASKTEIQLV-----QGLGVPPERIIYANPCKQVS 118
Query: 184 DILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLRLSPQRVYDATCILGNKFGADADEV 363
I YA+ +GV +TFD+E EL+K+++ P +LVLR++ A C L KFGA
Sbjct: 119 QIKYAASSGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDS-KAVCRLSVKFGATLKTS 177
Query: 364 PFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGG 543
LL+RAKEL+++V+GVSFHVGSGC + + F + V V ++ ++GF +LDIGGG
Sbjct: 178 RLLLERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMGTEVGFSMYLLDIGGG 237
Query: 544 FPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVI 723
FPG +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+TL +I
Sbjct: 238 FPGSEDT------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNII 291
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xODC1)
Length = 460
Score = 194 bits (493), Expect = 3e-49
Identities = 107/240 (44%), Positives = 146/240 (60%)
Frame = +1
Query: 4 PFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVIDSMSYNTTQAATNIIFANPFKFKK 183
PFYAVKC ++ L LGAGFDCASK EI+ V + + II+ANP K
Sbjct: 64 PFYAVKCNDGKAIVKTLSILGAGFDCASKTEIQLV-----QSIGVSPERIIYANPCKQVS 118
Query: 184 DILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLRLSPQRVYDATCILGNKFGADADEV 363
I YA+ GV +TFD+E EL+K+++ P +LVLR++ A C L KFGA
Sbjct: 119 QIKYAASCGVEKMTFDSEVELMKVARNHPNAKLVLRIATDDS-KAVCRLSVKFGATLKTS 177
Query: 364 PFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGG 543
LL+RAKEL+++++GVSFHVGSGC + + + V V ++ ++GF +LDIGGG
Sbjct: 178 RLLLERAKELNVDIIGVSFHVGSGCTDPQTYVQAVSDARCVFDMGAELGFNMHLLDIGGG 237
Query: 544 FPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVI 723
FPG V +LKFEE+ +N LD YFP ++G KIIAEPGRY+V ++TL +I
Sbjct: 238 FPGSEDV------KLKFEEITSVINPALDKYFPADSGVKIIAEPGRYYVASSFTLAVNII 291
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xODC2)
Length = 456
Score = 192 bits (487), Expect = 1e-48
Identities = 108/249 (43%), Positives = 148/249 (59%)
Frame = +1
Query: 1 QPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVIDSMSYNTTQAATNIIFANPFKFK 180
+PFYAVKC V+ L +LGAGFDCASK EI+ V D A II+ANP K
Sbjct: 62 KPFYAVKCNSSKGVVKILAELGAGFDCASKTEIELVQD-----VGVAPERIIYANPCKQI 116
Query: 181 KDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLRLSPQRVYDATCILGNKFGADADE 360
I YA++ GV +TFD E EL K+S+ P ++VLR++ ++ L KFGA
Sbjct: 117 SQIKYAAKNGVQMMTFDNEVELSKVSRSHPNARMVLRIATDDS-KSSARLSVKFGAPLKS 175
Query: 361 VPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGG 540
LL+ AK LS++V+GVSFHVGSGC + A+ + + V E+A + G+K +LDIGG
Sbjct: 176 CRRLLEMAKNLSVDVIGVSFHVGSGCTDSKAYTQAISDARLVFEMASEFGYKMWLLDIGG 235
Query: 541 GFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQV 720
GFPG +++FEE+ +N LD YFPE + +IIAEPGRY+V A++L V
Sbjct: 236 GFPGTE------DSKIRFEEIAGVINPALDMYFPESSDVQIIAEPGRYYVASAFSLAVNV 289
Query: 721 IGVHSLDLS 747
I ++ S
Sbjct: 290 IAKKEVEHS 298
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC)
Length = 450
Score = 189 bits (479), Expect = 1e-47
Identities = 106/240 (44%), Positives = 143/240 (59%)
Frame = +1
Query: 4 PFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVIDSMSYNTTQAATNIIFANPFKFKK 183
PFYAVKC V+ L LGAGFDCASK EI+ V + II+ANP K
Sbjct: 54 PFYAVKCNDSEAVVKTLAVLGAGFDCASKTEIQLV-----QSIGVPPERIIYANPCKQLS 108
Query: 184 DILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLRLSPQRVYDATCILGNKFGADADEV 363
I +A+ +GV +TFD+E EL+K+++ P +L+LR++ A C L KFGA
Sbjct: 109 QIKHAANSGVRMMTFDSEVELMKIARPHPKAKLLLRITTDDS-KAVCRLSVKFGATLKTS 167
Query: 364 PFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGG 543
LL+RAKEL + +VGVSFHVGSGC + + F + + V ++ ++GF +LDIGGG
Sbjct: 168 RLLLERAKELDLAIVGVSFHVGSGCTDPETFVQAISDARCVFDMGAELGFNMYLLDIGGG 227
Query: 544 FPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVI 723
FPG V +LKFEE+ +N LD YFP ++ IIAEPGRY+V A+TL +I
Sbjct: 228 FPGSEDV------KLKFEEITSVINPALDKYFPLDSEVTIIAEPGRYYVASAFTLAVNII 281
>sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC)
Length = 422
Score = 180 bits (456), Expect = 5e-45
Identities = 106/272 (38%), Positives = 150/272 (55%), Gaps = 1/272 (0%)
Frame = +1
Query: 1 QPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVIDSMSYNTTQAATNIIFANPFKFK 180
+PFYAVKC D +I L LG GFDCASK EI V+ T +A II+ANP K +
Sbjct: 65 EPFYAVKCNTDLVLIRILASLGCGFDCASKDEIDIVM-----GTGVSAERIIYANPCKTR 119
Query: 181 KDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLRLSPQRVYDATCILGNKFGADAD- 357
I +A V +TFD EL+K+++ P +++LR++ ATC L KFGAD
Sbjct: 120 SFIAHAMDRDVKMMTFDNPEELLKIAKLHPNAEMILRIAVSDP-TATCPLNLKFGADPII 178
Query: 358 EVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIG 537
P LL+ A E +NVVG+SFHVGSGCN+ A+ + + + E+ +GFK I+D+G
Sbjct: 179 AAPQLLKTASEEGINVVGISFHVGSGCNDASAYRNALQHAKNLCEIGEGLGFKMDIIDMG 238
Query: 538 GGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQ 717
GGFPG N FE++ + LD +FP+ N ++IAEPGR+F G ++LV
Sbjct: 239 GGFPGAEHHN-------PFEKIAETIRDALDEFFPDTN-KRLIAEPGRFFAAGPFSLVAN 290
Query: 718 VIGVHSLDLSNPIANINNIACHKSNYETYDSI 813
+I + S + + A H Y D +
Sbjct: 291 IIHATEVPASKITKDPKDCADHGYMYYINDGV 322
>sp|P40807|DCOR1_DROME Ornithine decarboxylase 1 (ODC)
Length = 394
Score = 178 bits (451), Expect = 2e-44
Identities = 107/293 (36%), Positives = 160/293 (54%), Gaps = 3/293 (1%)
Frame = +1
Query: 1 QPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVIDSMSYNTTQAATNIIFANPFKFK 180
+PFYAVKC DP V+ L +LGAGFDCASK E+K V+ + IIFANP +
Sbjct: 56 KPFYAVKCNDDPMVVRLLAQLGAGFDCASKNEVKLVL-----GFDVSPERIIFANPCRPV 110
Query: 181 KDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLRLSPQRVYDATCILGNKFGADAD- 357
+ YA V+ T D E E+ KL +P L++R + +A C LG+KFG DAD
Sbjct: 111 SHLEYAKEHQVSNGTVDNEFEVYKLHTHYPNSNLIVRFKSE-AKEAQCPLGDKFGCDADV 169
Query: 358 EVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIG 537
+ L+ AK L + V G SFHVGSGC+E+ A+ + + + +G+ LDIG
Sbjct: 170 DAAALMLLAKSLELKVTGTSFHVGSGCSELQAYDRAIKKAKNLFKFGALLGYDMDFLDIG 229
Query: 538 GGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQ 717
GGFPG S +KFE++ +N + +FP+E + IIAEPGR+FV A TLV +
Sbjct: 230 GGFPG--------SDDVKFEKIAESVNTSVQRHFPDERVH-IIAEPGRFFVAAACTLVCK 280
Query: 718 VIGVHSLDLSNPIANINNIACHKSN--YETYDSIETSSQGSIAEYLMDSMSDI 870
+ ++ N ++ + + ++ Y +++ I Q IAE+ +D+ +
Sbjct: 281 IHA--KREIRNEAGKLDTVMYYLNDGVYGSFNCILYDHQVVIAEHYLDNAESL 331
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,407,569
Number of Sequences: 369166
Number of extensions: 2015184
Number of successful extensions: 5887
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5767
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)