Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J10
(825 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P16237|HMDH_SCHMA 3-hydroxy-3-methylglutaryl-coenzyme A ... 242 1e-63
sp|O76819|HMDH_AGRIP 3-hydroxy-3-methylglutaryl-coenzyme A ... 211 1e-54
sp|Q12649|HMDH_PHYBL 3-hydroxy-3-methylglutaryl-coenzyme A ... 211 3e-54
sp|P48021|HMDH_CAMAC 3-hydroxy-3-methylglutaryl-coenzyme A ... 205 1e-52
sp|P34136|HMDH2_DICDI 3-hydroxy-3-methylglutaryl-coenzyme A... 204 2e-52
sp|Q41438|HMD3_SOLTU 3-hydroxy-3-methylglutaryl-coenzyme A ... 202 7e-52
sp|P14773|HMDH_DROME 3-hydroxy-3-methylglutaryl-coenzyme A ... 201 2e-51
sp|P54960|HMDH_BLAGE 3-hydroxy-3-methylglutaryl-coenzyme A ... 201 3e-51
sp|P34135|HMDH1_DICDI 3-hydroxy-3-methylglutaryl-coenzyme A... 200 5e-51
sp|P29057|HMD1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A ... 199 1e-50
>sp|P16237|HMDH_SCHMA 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
Length = 948
Score = 242 bits (617), Expect = 1e-63
Identities = 133/275 (48%), Positives = 181/275 (65%), Gaps = 2/275 (0%)
Frame = +1
Query: 7 AGGITTVIYGDKMTRSPVVQFNSIKRVLDCMNWIN-EDGFQLLKSHFDKTSRYGSLLSIN 183
AGGI +V+Y D+MTR+PVV F SI + C+ WI+ E+GFQ LKS FDKTS + +LLS+
Sbjct: 584 AGGIKSVVYRDQMTRAPVVWFPSIIDSVKCIAWIDSEEGFQTLKSAFDKTSAHVNLLSVF 643
Query: 184 PFPSGRKLHLRFSASTGNAMGMNILSKGVDESLRVLKENFPDMDVISLSGNMCSDKKSTA 363
P+GR +H+RF+A TG+AMGMN++SK D +L LK+ F +M VISLSGNMC+DKK
Sbjct: 644 ACPAGRYIHIRFAARTGDAMGMNMVSKATDSALHCLKKYFSNMQVISLSGNMCTDKKPAT 703
Query: 364 INWILGRGKSVIAECQLTHDIVENILKTDAVSLEKLCIAK-XXXXXXXXXXXXXXXXXXX 540
IN ILGRGKSVIAE L+ D++ +L T+A L +L +K
Sbjct: 704 INTILGRGKSVIAEAHLSADVLAQVLHTNAQRLARLTHSKNWIGSAMAGCPGMMGCNAHA 763
Query: 541 XXXXXXXXXXTGQDLAQVVESSSCITEMEALPQKNNTNKFDLLITCTMPCLEVGVIGGGT 720
TGQDLAQVV+SSSC+T++E + + L+ + TMPCLEVG +GGGT
Sbjct: 764 ANIIAGMFAATGQDLAQVVDSSSCLTQLEV-----DLSDDSLVASVTMPCLEVGTVGGGT 818
Query: 721 KLKAQKSCLSLLNLNEEKPCENFARIICATVLCSE 825
+L Q++CL LL+L+ ++P E+ +RII TVL +E
Sbjct: 819 RLSGQRACLDLLDLSVDRPTEHLSRIIAGTVLAAE 853
>sp|O76819|HMDH_AGRIP 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
Length = 833
Score = 211 bits (538), Expect = 1e-54
Identities = 121/277 (43%), Positives = 162/277 (58%), Gaps = 6/277 (2%)
Frame = +1
Query: 13 GITTVIYGDKMTRSPVVQFNSIKRVLDCMNWI-NEDGFQLLKSHFDKTSRYGSLLSINPF 189
G+T+V+ MTR+P ++ ++ R +C WI N+D + ++K FD TSR+ L I+
Sbjct: 522 GVTSVVEDVGMTRAPAIKLPNVVRAHECRQWIDNKDNYAVIKEAFDSTSRFARLQEIHIG 581
Query: 190 PSGRKLHLRFSASTGNAMGMNILSKGVDESLRVLKENFPDMDVISLSGNMCSDKKSTAIN 369
G L+LRF A+TG+AMGMN++SKG + +L++LK FPDM+VISLSGN CSDKK+ AIN
Sbjct: 582 VDGATLYLRFRATTGDAMGMNMVSKGAENALKLLKNYFPDMEVISLSGNYCSDKKAAAIN 641
Query: 370 WILGRGKSVIAECQLTHDIVENILKTDAVSLEKLCIAKXXXXXXXXXXXXXXXXXXXXXX 549
W+ GRGK V+ E +T D + I KTDA +L + C
Sbjct: 642 WVKGRGKRVVCETTITSDSLRTIFKTDAKTLAR-CNKIKNLSGSALAGSIGGNNAHAANM 700
Query: 550 XXXXXXXTGQDLAQVVESSSCITEMEALPQKNNTNKFDLLITCTMPCLEVGVIGGGTKLK 729
TGQD AQ V SS+C T ME + N DL +TCTMP LEVG +GGGT L
Sbjct: 701 VTAIYIATGQDPAQNVTSSNCSTNMEVCGE----NGEDLYVTCTMPSLEVGTVGGGTILT 756
Query: 730 AQKSCLSLLNLN--EEKPCENFAR---IICATVLCSE 825
Q +CL +L + +P EN AR +ICATVL E
Sbjct: 757 GQGACLDILGVKGAGARPAENSARLASLICATVLAGE 793
>sp|Q12649|HMDH_PHYBL 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
Length = 1176
Score = 211 bits (536), Expect = 3e-54
Identities = 121/281 (43%), Positives = 166/281 (59%), Gaps = 6/281 (2%)
Frame = +1
Query: 1 SAAGGITTVIYGDKMTRSPVVQFNSIKRVLDCMNWINEDGFQLLKSHFDKTSRYGSLLSI 180
+A GG +T++ D MTR P V+F +I R C WI +G ++ + F+ TSR+ L +
Sbjct: 856 NAGGGASTIVIADGMTRGPCVEFPTILRAAACKLWIENEGNDIVTNAFNSTSRFARLRKL 915
Query: 181 NPFPSGRKLHLRFSASTGNAMGMNILSKGVDESLRVLKENFPDMDVISLSGNMCSDKKST 360
+G+ + +RFS +TG+AMGMN++SKG +++L ++ E+FPDM +ISLSGN C+DKK
Sbjct: 916 KIALAGKLVFIRFSTTTGDAMGMNMISKGCEKALSIITEHFPDMQIISLSGNYCTDKKPA 975
Query: 361 AINWILGRGKSVIAECQLTHDIVENILKTDAVSLEKLCIAKXXXXXXXXXXXXXXXXXXX 540
AINWI GRGKSV+ E + IVE +LKT +L +L I+K
Sbjct: 976 AINWIEGRGKSVVTEAVIPGAIVEKVLKTTVAALVELNISK-NLIGSAMAGSVGGFNAHA 1034
Query: 541 XXXXXXXXXXTGQDLAQVVESSSCITEMEALPQKNNTNKFDLLITCTMPCLEVGVIGGGT 720
TGQD AQ VESS+CIT M+A+ N+T DL I+CTMP +EVG IGGGT
Sbjct: 1035 ANILTAIYLATGQDPAQNVESSNCITLMKAV---NDTK--DLHISCTMPSIEVGTIGGGT 1089
Query: 721 KLKAQKSCLSLLNLNEEKPCE------NFARIICATVLCSE 825
L Q+S L +L + P E ARIICA V+ E
Sbjct: 1090 ILPPQQSMLDMLGVRGPHPTEPGKNAQRLARIICAAVMAGE 1130
>sp|P48021|HMDH_CAMAC 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
Length = 593
Score = 205 bits (522), Expect = 1e-52
Identities = 122/281 (43%), Positives = 170/281 (60%), Gaps = 7/281 (2%)
Frame = +1
Query: 4 AAGGITTVIYGDKMTRSPVVQFNSIKRVLDCMNWI-NEDGFQLLKSHFDKTSRYGSLLSI 180
A GG T+V+ D MTR+PVV+F S KR D ++ N F+ L + F+ +SR+G L +I
Sbjct: 288 ACGGATSVLLRDAMTRAPVVRFGSAKRAADLKFFLENPLNFETLAAVFNSSSRFGKLQNI 347
Query: 181 NPFPSGRKLHLRFSASTGNAMGMNILSKGVDESLRVLKENFPDMDVISLSGNMCSDKKST 360
+G+ L++R+S STG+AMGMN++SKGV L L+++FPDMDVI +SGN CSDKK
Sbjct: 348 KCAIAGKNLYMRYSCSTGDAMGMNMISKGVQNVLDFLQDDFPDMDVIGISGNYCSDKKPA 407
Query: 361 AINWILGRGKSVIAECQLTHDIVENILKTDAVSLEKLCIAKXXXXXXXXXXXXXXXXXXX 540
A+NWI GRGKSV+ E + ++V+ +LKT+ SL +L + K
Sbjct: 408 AVNWIEGRGKSVVCEAVIKEEVVKKVLKTNVASLVELNMLK-NLTGSAMAGALGGFNAHA 466
Query: 541 XXXXXXXXXXTGQDLAQVVESSSCITEMEALPQKNNTNKFDLLITCTMPCLEVGVIGGGT 720
TGQD AQ VESS CIT MEA+ N K DL ++ TMP +EVG +GGGT
Sbjct: 467 SNIVSAVYLATGQDPAQNVESSHCITMMEAI----NDGK-DLHVSVTMPSIEVGTVGGGT 521
Query: 721 KLKAQKSCLSLLNL---NEEKPCEN---FARIICATVLCSE 825
+L +Q +CL+LL + ++E P N A I+ +VL E
Sbjct: 522 QLASQSACLNLLGVKGASKEAPGSNARLLATIVAGSVLAGE 562
>sp|P34136|HMDH2_DICDI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (HMG-CoA
reductase 2)
Length = 481
Score = 204 bits (520), Expect = 2e-52
Identities = 124/280 (44%), Positives = 170/280 (60%), Gaps = 7/280 (2%)
Frame = +1
Query: 7 AGGITTVIYGDKMTRSPVVQFNSIKRVLDCMNWI-NEDGFQLLKSHFDKTSRYGSLLSIN 183
+GG TV+ MTR+PV + S R + WI N++ F + S F+ TSR+ L SI
Sbjct: 165 SGGAKTVLLQSGMTRAPVCRLPSSIRAGELKQWIENQENFYQVASAFNSTSRFARLKSIK 224
Query: 184 PFPSGRKLHLRFSASTGNAMGMNILSKGVDESLRVLKENFPDMDVISLSGNMCSDKKSTA 363
+GR ++LRF +STG+AMGMN++SKGV+++L V+ E FP+M+V+SLSGN+C+DKK ++
Sbjct: 225 VVIAGRLVYLRFKSSTGDAMGMNMVSKGVEKALEVITEYFPEMEVLSLSGNVCTDKKPSS 284
Query: 364 INWILGRGKSVIAECQLTHDIVENILKTDAVSLEKLCIAKXXXXXXXXXXXXXXXXXXXX 543
INW+ GRGKSV+AE ++ DIV ++LKT +L L I K
Sbjct: 285 INWLEGRGKSVVAEAVISGDIVRDVLKTTVEALVSLNIDK-NLIGSAMAGSIGGFNAHAS 343
Query: 544 XXXXXXXXXTGQDLAQVVESSSCITEMEALPQKNNTNKFDLLITCTMPCLEVGVIGGGTK 723
TGQD AQ VESS+CIT ME++ N K DL I+ TMP +EVG +GGGT
Sbjct: 344 NIVTALYIATGQDPAQNVESSNCITLMESI----NGGK-DLYISVTMPSIEVGTVGGGTH 398
Query: 724 LKAQKSCLSLLNL---NEEKP---CENFARIICATVLCSE 825
L AQ +CL LL + N E+P E AR++ A VL E
Sbjct: 399 LPAQSACLDLLKIRGANLERPGANSEQLARVVAAAVLSGE 438
>sp|Q41438|HMD3_SOLTU 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 (HMG-CoA reductase
3) (HMG3.3)
Length = 574
Score = 202 bits (515), Expect = 7e-52
Identities = 119/280 (42%), Positives = 167/280 (59%), Gaps = 7/280 (2%)
Frame = +1
Query: 7 AGGITTVIYGDKMTRSPVVQFNSIKRVLDCMNWINED-GFQLLKSHFDKTSRYGSLLSIN 183
+GG T+V++ D MTR+PVV+F S KR + ++ + F+ L F+K+SR+ L +I
Sbjct: 273 SGGATSVLFRDAMTRAPVVRFGSAKRAAELKFFVEDPMNFETLSVVFNKSSRFARLQNIQ 332
Query: 184 PFPSGRKLHLRFSASTGNAMGMNILSKGVDESLRVLKENFPDMDVISLSGNMCSDKKSTA 363
+G+ L++RFS STG+AMGMN++SKGV L L+ +PDMD+I +SGN CSDKK A
Sbjct: 333 CAIAGKNLYMRFSCSTGDAMGMNMVSKGVQNVLDYLQNEYPDMDIIGISGNYCSDKKPAA 392
Query: 364 INWILGRGKSVIAECQLTHDIVENILKTDAVSLEKLCIAKXXXXXXXXXXXXXXXXXXXX 543
+NWI GRGKSV+ E + D+V+ +LKT+ +L +L + K
Sbjct: 393 VNWIEGRGKSVVCEAIIKEDVVKKVLKTEVATLVELNMLK-NLTGSAMAGALGGFNAHAS 451
Query: 544 XXXXXXXXXTGQDLAQVVESSSCITEMEALPQKNNTNKFDLLITCTMPCLEVGVIGGGTK 723
TGQD AQ +ESS CIT MEA+ N K DL I+ TMP +EVG +GGGT+
Sbjct: 452 NIVSAVYLATGQDPAQNIESSHCITMMEAV----NDGK-DLHISVTMPSIEVGTVGGGTQ 506
Query: 724 LKAQKSCLSLLNL---NEEKPCEN---FARIICATVLCSE 825
L +Q +CL+LL + N E P N A I+ +VL E
Sbjct: 507 LASQSACLNLLGVKGANREAPGSNARLLATIVAGSVLAGE 546
>sp|P14773|HMDH_DROME 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
Length = 920
Score = 201 bits (511), Expect = 2e-51
Identities = 114/278 (41%), Positives = 163/278 (58%), Gaps = 7/278 (2%)
Frame = +1
Query: 13 GITTVIYGDKMTRSPVVQFNSIKRVLDCMNWI-NEDGFQLLKSHFDKTSRYGSLLSINPF 189
G+ +V+ MTR+P V+F S+ R + +WI N++ ++++K+ FD TSR+G L +
Sbjct: 604 GVRSVVEDVGMTRAPCVRFPSVARAAEAKSWIENDENYRVVKTEFDSTSRFGRLKDCHIA 663
Query: 190 PSGRKLHLRFSASTGNAMGMNILSKGVDESLRVLKENFPDMDVISLSGNMCSDKKSTAIN 369
G +L++RF A TG+AMGMN++SKG + +LR ++ FPDM +ISLSGN C DKK AIN
Sbjct: 664 MDGPQLYIRFVAITGDAMGMNMVSKGAEMALRRIQLQFPDMQIISLSGNFCCDKKPAAIN 723
Query: 370 WILGRGKSVIAECQLTHDIVENILKTDAVSLEKLCIAKXXXXXXXXXXXXXXXXXXXXXX 549
WI GRGK V+ EC ++ + ++LKTDA +L + C
Sbjct: 724 WIKGRGKRVVTECTISAATLRSVLKTDAKTLVE-CNKLKNMGGSAMAGSIGGNNAHAANM 782
Query: 550 XXXXXXXTGQDLAQVVESSSCITEMEALPQKNNTNKFDLLITCTMPCLEVGVIGGGTKLK 729
TGQD AQ V SS+C T ME + N DL +TCTMP LEVG +GGGT L
Sbjct: 783 VTAVFLATGQDPAQNVTSSNCSTAMECWAE----NSEDLYMTCTMPSLEVGTVGGGTGLP 838
Query: 730 AQKSCLSLLNL---NEEKPCEN---FARIICATVLCSE 825
Q +CL +L + + +P +N A+I+CATV+ E
Sbjct: 839 GQSACLEMLGVRGAHATRPGDNAKKLAQIVCATVMAGE 876
>sp|P54960|HMDH_BLAGE 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
Length = 856
Score = 201 bits (510), Expect = 3e-51
Identities = 117/278 (42%), Positives = 163/278 (58%), Gaps = 7/278 (2%)
Frame = +1
Query: 13 GITTVIYGDKMTRSPVVQFNSIKRVLDCMNWINED-GFQLLKSHFDKTSRYGSLLSINPF 189
G+T+ I D MTR PVV+F +I R + M W+ F+ +K +FD TSR+ L I+
Sbjct: 546 GVTSRIVADGMTRGPVVRFPNIDRASEAMLWMQVPYNFEQIKKNFDSTSRFARLSKIHIR 605
Query: 190 PSGRKLHLRFSASTGNAMGMNILSKGVDESLRVLKENFPDMDVISLSGNMCSDKKSTAIN 369
+GR L +RF A+TG+AMGMN+LSKG + +L +++ +PDM+++SLSGN C+DKK A+N
Sbjct: 606 VAGRHLFIRFIATTGDAMGMNMLSKGTEVALAYVQQVYPDMEILSLSGNFCTDKKPAAVN 665
Query: 370 WILGRGKSVIAECQLTHDIVENILKTDAVSLEKLCIAKXXXXXXXXXXXXXXXXXXXXXX 549
WI GRGKSV+ E + DI++++LKT +L + I K
Sbjct: 666 WIEGRGKSVVCEAIVPADIIKSVLKTSVQALMDVNITK-NLIGSAVAGSIGGFNAHAANI 724
Query: 550 XXXXXXXTGQDLAQVVESSSCITEMEALPQKNNTNKFDLLITCTMPCLEVGVIGGGTKLK 729
TGQD AQ V SS+C+T ME + DL ++CTMP +E+G IGGGT L
Sbjct: 725 VTAIFIATGQDPAQNVGSSNCMTLMEPWGEDGK----DLYVSCTMPSIEIGTIGGGTVLP 780
Query: 730 AQKSCLSLLNL---NEEKPCEN---FARIICATVLCSE 825
Q +CL +L + NE P EN ARI+C TVL E
Sbjct: 781 PQAACLDMLGVRGANEMCPGENANTLARIVCGTVLAGE 818
>sp|P34135|HMDH1_DICDI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase
1)
Length = 552
Score = 200 bits (508), Expect = 5e-51
Identities = 116/280 (41%), Positives = 165/280 (58%), Gaps = 7/280 (2%)
Frame = +1
Query: 7 AGGITTVIYGDKMTRSPVVQFNSIKRVLDCMNWINE-DGFQLLKSHFDKTSRYGSLLSIN 183
+GG I MTR+PVV+F+ I + + ++WIN+ D +Q LK+ FD TSR+ L +I
Sbjct: 254 SGGAKCTITSRGMTRAPVVRFSDIVKASEFVSWINDTDNYQALKAVFDSTSRFARLSAIK 313
Query: 184 PFPSGRKLHLRFSASTGNAMGMNILSKGVDESLRVLKENFPDMDVISLSGNMCSDKKSTA 363
+GR +++RF TG+AMGMN++SKGV+ L LK F DM ++S+SGNMC+DKK ++
Sbjct: 314 CTIAGRSVYIRFKCDTGDAMGMNMVSKGVEAVLEHLKIIFDDMTLLSISGNMCTDKKPSS 373
Query: 364 INWILGRGKSVIAECQLTHDIVENILKTDAVSLEKLCIAKXXXXXXXXXXXXXXXXXXXX 543
INW GRG+SV+ E +T D+V+ +LKT+ +L L IAK
Sbjct: 374 INWTEGRGRSVVCEAMITGDVVQRVLKTNVQALVDLNIAK-NLIGSAMAGSIGGFNAHAS 432
Query: 544 XXXXXXXXXTGQDLAQVVESSSCITEMEALPQKNNTNKFDLLITCTMPCLEVGVIGGGTK 723
TGQD AQ VESS+CIT+MEA + DL IT TMP +EVG +GGGT
Sbjct: 433 NIVTAIFLATGQDCAQNVESSNCITQMEAC-----NDGQDLYITVTMPSIEVGTVGGGTS 487
Query: 724 LKAQKSCLSLLNL---NEEKP---CENFARIICATVLCSE 825
L AQ +CL ++ + + KP + A+ I + V+ E
Sbjct: 488 LPAQSACLDIIGVKGSSSSKPGANADQLAKTIASAVMAGE 527
>sp|P29057|HMD1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase
1)
Length = 575
Score = 199 bits (505), Expect = 1e-50
Identities = 121/280 (43%), Positives = 165/280 (58%), Gaps = 7/280 (2%)
Frame = +1
Query: 7 AGGITTVIYGDKMTRSPVVQFNSIKRVLDCMNWINE-DGFQLLKSHFDKTSRYGSLLSIN 183
+GG T+V+ D MTR+PVV+F S R + ++ + D F L F+K+SR+ L I
Sbjct: 271 SGGATSVLLKDGMTRAPVVRFASATRAAELKFFLEDPDNFDTLAVVFNKSSRFARLQGIK 330
Query: 184 PFPSGRKLHLRFSASTGNAMGMNILSKGVDESLRVLKENFPDMDVISLSGNMCSDKKSTA 363
+G+ L++RFS STG+AMGMN++SKGV L L+ +F DMDVI +SGN CSDKK A
Sbjct: 331 CSIAGKNLYIRFSCSTGDAMGMNMVSKGVQNVLEFLQSDFSDMDVIGISGNFCSDKKPAA 390
Query: 364 INWILGRGKSVIAECQLTHDIVENILKTDAVSLEKLCIAKXXXXXXXXXXXXXXXXXXXX 543
+NWI GRGKSV+ E + ++V+ +LKT+ SL +L + K
Sbjct: 391 VNWIEGRGKSVVCEAIIKEEVVKKVLKTNVASLVELNMLK-NLAGSAVAGALGGFNAHAG 449
Query: 544 XXXXXXXXXTGQDLAQVVESSSCITEMEALPQKNNTNKFDLLITCTMPCLEVGVIGGGTK 723
TGQD AQ VESS CIT MEA+ N K DL I+ TMP +EVG +GGGT+
Sbjct: 450 NIVSAIFIATGQDPAQNVESSHCITMMEAV----NDGK-DLHISVTMPSIEVGTVGGGTQ 504
Query: 724 LKAQKSCLSLLNL---NEEKPCEN---FARIICATVLCSE 825
L +Q +CL+LL + N+E P N A I+ +VL E
Sbjct: 505 LASQSACLNLLGVKGANKESPGSNSRLLAAIVAGSVLAGE 544
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,863,047
Number of Sequences: 369166
Number of extensions: 1758056
Number of successful extensions: 4369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4257
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)