Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_I23
(328 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H4Q3|PRD13_HUMAN PR-domain zinc finger protein 13 34 0.12
sp|O95497|VNN1_HUMAN Pantetheinase precursor (Pantetheine h... 28 4.9
>sp|Q9H4Q3|PRD13_HUMAN PR-domain zinc finger protein 13
Length = 717
Score = 33.9 bits (76), Expect = 0.12
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Frame = -1
Query: 205 CSAPPK---GIKAHP*-D*HTLPTLM*PFTIALPT*SGSLLLMQPPTTA-------FNGA 59
C+ PP G+KA+P + LP +M FT+ +G LL P TTA F G
Sbjct: 444 CALPPLDPGGLKAYPGGECSHLPAVMPAFTVY----NGELLYGSPATTAYYPLKLHFGGL 499
Query: 58 CPFPQGIHAYSGP 20
+P+ I +SGP
Sbjct: 500 LKYPESISYFSGP 512
>sp|O95497|VNN1_HUMAN Pantetheinase precursor (Pantetheine hydrolase) (Vascular
non-inflammatory molecule 1) (Vanin-1) (Tiff66)
Length = 513
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +3
Query: 24 PEYAWIPCGN----GQAPLNAVVGGCINNNEPLYV 116
PE WIPC N GQ P+ + C+ N +YV
Sbjct: 102 PEVNWIPCNNRNRFGQTPVQERL-SCLAKNNSIYV 135
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,571,427
Number of Sequences: 369166
Number of extensions: 670083
Number of successful extensions: 1509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)