Planarian EST Database

Dr_sW_009_I09

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_009_I09
         (868 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20050|HOP1_YEAST  Meiosis-specific protein HOP1                42   0.002

>sp|P20050|HOP1_YEAST Meiosis-specific protein HOP1
          Length = 605

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
 Frame = +2

Query: 182 KTVIIGFYTDFEDPDTVIESYSFKFTYGHDS---VSIKIDNKETESELNAVINNDEVPEK 352
           K + +G +   EDP  ++E+Y F F Y  ++   +++ +   +  S+ NA   N+ +   
Sbjct: 108 KALSLGIF--LEDPTDLLENYIFSFDYDEENNVNINVNLSGNKKGSK-NADPENETISLL 164

Query: 353 IKKATIS-LLRTMILAGNTQDPLPEKVIVTMKLLYYD 460
             +  +  L+R  I+   + +PLP+K  +TM+L++ D
Sbjct: 165 DSRRMVQQLMRRFIIITQSLEPLPQKKFLTMRLMFND 201

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,884,492
Number of Sequences: 369166
Number of extensions: 1539388
Number of successful extensions: 2900
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2899
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)