Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_I08
(823 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein... 60 9e-09
sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprote... 60 9e-09
sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3) 42 0.002
sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3) 42 0.002
sp|P57724|PCBP4_MOUSE Poly(rC)-binding protein 4 (Alpha-CP4) 42 0.002
sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4) 42 0.002
sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 (Alpha-CP2... 41 0.005
sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 (Alpha-CP2... 41 0.005
sp|P58223|Y4837_ARATH Putative nucleic acid binding protein... 40 0.006
sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein ... 39 0.023
>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K (dC stretch-binding
protein) (CSBP)
sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K
sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K (hnRNP K) (Transformation
up-regulated nuclear protein) (TUNP)
Length = 463
Score = 59.7 bits (143), Expect = 9e-09
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = +2
Query: 551 QVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNMETILSLTGTKDQIDGAQYL 730
QV+IP L S+ GK G+ + I +SGA I ID E + + I+++TGT+DQI AQYL
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 731 LQICIKK 751
LQ +K+
Sbjct: 451 LQNSVKQ 457
>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K (hnRNP K)
Length = 463
Score = 59.7 bits (143), Expect = 9e-09
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = +2
Query: 551 QVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNMETILSLTGTKDQIDGAQYL 730
QV+IP L S+ GK G+ + I +SGA I ID E + + I+++TGT+DQI AQYL
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 731 LQICIKK 751
LQ +K+
Sbjct: 451 LQNSVKQ 457
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3)
Length = 339
Score = 42.4 bits (98), Expect = 0.002
Identities = 28/82 (34%), Positives = 42/82 (51%)
Frame = +2
Query: 521 ASSNASIEKLQVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNMETILSLTGT 700
AS AS +L +IP LI + G+ G ++ I SGA+I I E + E +++TGT
Sbjct: 257 ASPPASTHEL--TIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGT 314
Query: 701 KDQIDGAQYLLQICIKKSVLNL 766
I AQYL+ + V +
Sbjct: 315 PANISLAQYLINARLTSEVTGM 336
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3)
Length = 339
Score = 42.4 bits (98), Expect = 0.002
Identities = 28/82 (34%), Positives = 42/82 (51%)
Frame = +2
Query: 521 ASSNASIEKLQVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNMETILSLTGT 700
AS AS +L +IP LI + G+ G ++ I SGA+I I E + E +++TGT
Sbjct: 257 ASPPASTHEL--TIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGT 314
Query: 701 KDQIDGAQYLLQICIKKSVLNL 766
I AQYL+ + V +
Sbjct: 315 PANISLAQYLINARLTSEVTGM 336
>sp|P57724|PCBP4_MOUSE Poly(rC)-binding protein 4 (Alpha-CP4)
Length = 403
Score = 42.4 bits (98), Expect = 0.002
Identities = 25/82 (30%), Positives = 38/82 (46%)
Frame = +2
Query: 503 PDNIVGASSNASIEKLQVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNMETI 682
P + G + + +P LI V G+ G +S I SGA I I E E
Sbjct: 229 PSVVPGMDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERH 288
Query: 683 LSLTGTKDQIDGAQYLLQICIK 748
+++TG+ I AQYL+ C++
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
>sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4)
Length = 403
Score = 42.0 bits (97), Expect = 0.002
Identities = 25/82 (30%), Positives = 37/82 (45%)
Frame = +2
Query: 503 PDNIVGASSNASIEKLQVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNMETI 682
P + G + +P LI V G+ G +S I SGA I I E E
Sbjct: 229 PSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERH 288
Query: 683 LSLTGTKDQIDGAQYLLQICIK 748
+++TG+ I AQYL+ C++
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)
Length = 365
Score = 40.8 bits (94), Expect = 0.005
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +2
Query: 518 GASSNASIEKLQVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNMETILSLTG 697
G ++A +++IP LI + G+ G ++ I SGA+I I E + + +++TG
Sbjct: 280 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG 339
Query: 698 TKDQIDGAQYLLQI 739
+ I AQYL+ +
Sbjct: 340 SAASISLAQYLINV 353
>sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 (Alpha-CP2) (Putative heterogeneous
nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP)
Length = 362
Score = 40.8 bits (94), Expect = 0.005
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +2
Query: 518 GASSNASIEKLQVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNMETILSLTG 697
G ++A +++IP LI + G+ G ++ I SGA+I I E + + +++TG
Sbjct: 277 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG 336
Query: 698 TKDQIDGAQYLLQI 739
+ I AQYL+ +
Sbjct: 337 SAASISLAQYLINV 350
>sp|P58223|Y4837_ARATH Putative nucleic acid binding protein At4g18375
Length = 606
Score = 40.4 bits (93), Expect = 0.006
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 506 DNIVGASSNASIEKL------QVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQ 667
DN++G++ S +L ++ IP + V GK G L NI SGA I I +
Sbjct: 518 DNVLGSTGPYSYGRLPSSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTS 577
Query: 668 NMETILSLTGTKDQIDGAQYLLQ 736
+ + I L+GT +Q+ A+ L+Q
Sbjct: 578 HGDHIALLSGTLEQMRCAENLVQ 600
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 (FUSE-binding protein 1)
(FBP) (DNA helicase V) (HDH V)
Length = 643
Score = 38.5 bits (88), Expect = 0.023
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +2
Query: 542 EKLQVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNMETILSLTGTKDQIDGA 721
E + V IP + V G+NGE++ I +D+G I +D E I +TG D+ A
Sbjct: 275 EGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHA 334
Query: 722 QYLL 733
++
Sbjct: 335 AEII 338
Score = 38.5 bits (88), Expect = 0.023
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 539 IEKLQVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNME---TILSLTGTKDQ 709
+++ +PT + GK GE + +I SGA I + N N + + ++ GT Q
Sbjct: 375 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQ 434
Query: 710 IDGAQYLLQ 736
ID A+ L++
Sbjct: 435 IDYARQLIE 443
Score = 37.4 bits (85), Expect = 0.050
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 536 SIEKLQVSIPTSLIHSVKGKNGEVLSNIISDSGAEISIDGNDEQNMETILSLTGTKDQID 715
S+ + +P ++ + G+ GE +S I +SG +I I + E LTGT + +
Sbjct: 98 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQ 157
Query: 716 GAQYLLQICIKK 751
A+ LL ++K
Sbjct: 158 SAKRLLDQIVEK 169
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,499,972
Number of Sequences: 369166
Number of extensions: 1808340
Number of successful extensions: 5145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4998
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)