Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_I01
(302 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47368|TOP1_MYCGE DNA topoisomerase I (Omega-protein) (R... 30 1.7
sp|P23312|NIA_SPIOL Nitrate reductase [NADH] (NR) 29 3.9
sp|Q7ZVX0|CCNL1_BRARE Cyclin-L1 28 5.1
sp|P23843|OPPA_ECOLI Periplasmic oligopeptide-binding prote... 28 8.7
>sp|P47368|TOP1_MYCGE DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 709
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 175 IDFVLLYVANYFANMLTGTYSNHTFKASVpreKWTFPNPVSSNGSL 38
IDF+ A FAN LTG Y + P+ ++ PNPV + SL
Sbjct: 253 IDFLNEASATRFANQLTGEY--EVYFIDEPKIYYSSPNPVYTTASL 296
>sp|P23312|NIA_SPIOL Nitrate reductase [NADH] (NR)
Length = 926
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 118 YSNHTFKASVpreKWTFPNPVSSNGSLTAG 29
+SNH S R +TF NP SSNG + G
Sbjct: 22 FSNHHRSDSPVRNGYTFSNPPSSNGVVKPG 51
>sp|Q7ZVX0|CCNL1_BRARE Cyclin-L1
Length = 498
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 127 TGTYSNHTFKASVpreKWTFPNPVS 53
+GTYS+H+ + PR+K P+P+S
Sbjct: 388 SGTYSSHSSHSPSPRQKARRPSPIS 412
>sp|P23843|OPPA_ECOLI Periplasmic oligopeptide-binding protein precursor
Length = 543
Score = 27.7 bits (60), Expect = 8.7
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 145 YFANMLTGTYSNHTFKASVPR--EKWTFPNPVSSNGSLTAGS*YCNPRV 5
YF +L ++ KA++ + EKWT P + +NG+ T N R+
Sbjct: 180 YFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERI 228
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,684,625
Number of Sequences: 369166
Number of extensions: 580134
Number of successful extensions: 1538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)