Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_H24-2
(279 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 45 5e-05
sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (To... 40 0.001
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 37 0.018
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 36 0.024
sp|Q99088|LDLR2_XENLA Low-density lipoprotein receptor 2 pr... 33 0.20
sp|O15304|SIVA_HUMAN Apoptosis regulatory protein Siva (CD2... 33 0.27
sp|P22413|ENPP1_HUMAN Ectonucleotide pyrophosphatase/phosph... 33 0.27
sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precurs... 33 0.27
sp|P53971|YNC3_YEAST Hypothetical 108.5 kDa protein in UME3... 33 0.27
sp|Q58344|Y934_METJA Hypothetical polyferredoxin-like prote... 32 0.35
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 45.1 bits (105), Expect = 5e-05
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 42 EECADVDSDCG---SKTAEECISPDVYGKCEKSCHLCGDCVDSRPDCGFLKERGDCDKM- 209
+EC D+ +DC ++ + + S ++ C K+C+ C C D+ C RG C K
Sbjct: 105 QECTDLANDCSYNQNRCSVKEYSSLMHRLCPKTCNACNICEDANKMCPIWVPRGFCSKFD 164
Query: 210 ---YEKICRKTCGVC 245
+K C K+C +C
Sbjct: 165 HDKVQKSCAKSCNIC 179
>sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (Toxocara excretory-secretory
antigen 26) (TES-26)
Length = 262
Score = 40.4 bits (93), Expect = 0.001
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = +3
Query: 42 EECADVDSDCGSKTAEEC----ISPDVYGKCEKSCHLCGDCVDSRPDCGF---LKERGDC 200
++C D SDC + A C +S + +C+++C+ C DC D +C L +
Sbjct: 21 QQCMDSASDCAAN-AGSCFTRPVSQVLQNRCQRTCNTC-DCRDEANNCAASINLCQNPTF 78
Query: 201 DKMYEKICRKTCGVC 245
+ + C+KTCG+C
Sbjct: 79 EPLVRDRCQKTCGLC 93
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 36.6 bits (83), Expect = 0.018
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Frame = +3
Query: 117 KCEKSCHLC------GDCVDSRPDCGFLKERGDC--DKMYEKICRKTCGVC 245
+C+ SC +C G C D DC RG+C +K + CR++C C
Sbjct: 607 QCKVSCGVCRPNYVYGPCADYHYDCAAWARRGECLKNKWMPENCRRSCNTC 657
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Frame = +3
Query: 48 CADVDSDCGSKTAE-ECISPDVYGK--CEKSCHLCG-------DCVDSRPDCGFLKERGD 197
C + + CG +A+ EC VY C+ SC C +C D +C G+
Sbjct: 462 CFNENECCGPWSAKGECQKNPVYMNVWCKASCRQCTPNYNINEECSDRHTNCAMWSRSGE 521
Query: 198 CDK---MYEKICRKTCGVC 245
C+K + CR +C C
Sbjct: 522 CNKNPLWMSENCRSSCQKC 540
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 36.2 bits (82), Expect = 0.024
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Frame = +3
Query: 48 CAD-VDSDCGSKTA---EECISPDVYGKCEKSCHLCG--------DCVDSRPDCGFLKER 191
CAD ++DC T+ +P + C K+C CG CVDS +C ++
Sbjct: 67 CADDPNTDCTQYTSLCSNAKYTPLLQQFCPKTCGFCGGGSTAAPVQCVDSSTNCANWEKN 126
Query: 192 GDCDKMY------EKICRKTCGVC 245
G C + ++ C KTC +C
Sbjct: 127 GFCSSTFYDCANKKQYCAKTCKLC 150
>sp|Q99088|LDLR2_XENLA Low-density lipoprotein receptor 2 precursor (LDL receptor 2)
Length = 892
Score = 33.1 bits (74), Expect = 0.20
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 23/88 (26%)
Frame = +3
Query: 36 CDEE--CADVDSDCGSKTAEECISPDVY----GKC---EKSCHLCGDCVD--SRP--DCG 176
CD E C D+ + G +C PDV+ G+C +K CH DC D P +CG
Sbjct: 253 CDREYDCKDLSDEEGCVNVTKCQGPDVFKCRSGECITMDKVCHKKRDCRDWTDEPIKECG 312
Query: 177 ---FLKERGDCDKM-------YEKICRK 230
L+ G C + YE +C +
Sbjct: 313 ENECLRNNGGCSHICNDLKIGYECLCNE 340
>sp|O15304|SIVA_HUMAN Apoptosis regulatory protein Siva (CD27-binding protein) (CD27BP)
Length = 175
Score = 32.7 bits (73), Expect = 0.27
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 108 VYGKCEKSCHLCGDCVDSRPDCGF----LKERGDCDKMYEKICRKTCGV 242
V G+CE++ LCG CV + CG L DC MYEK+ +C +
Sbjct: 126 VCGQCERA--LCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAM 172
>sp|P22413|ENPP1_HUMAN Ectonucleotide pyrophosphatase/phosphodiesterase 1 (E-NPP 1)
(Phosphodiesterase I/nucleotide pyrophosphatase 1)
(Plasma-cell membrane glycoprotein PC-1) [Includes:
Alkaline phosphodiesterase I ; Nucleotide
pyrophosphatase (NPPase)]
Length = 925
Score = 32.7 bits (73), Expect = 0.27
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 36 CDEECADVDSDCGSKTAEECISPDVYGKCEKSCHLCGDCVDSRPDCGF---LKERGDCDK 206
CD C ++ +C E CI P+ C K CG+ +R C K++GDC
Sbjct: 122 CDAACVEL-GNCCLDYQETCIEPEHIWTCNK--FRCGEKRLTRSLCACSDDCKDKGDCCI 178
Query: 207 MYEKICR 227
Y +C+
Sbjct: 179 NYSSVCQ 185
>sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precursor (Nematode astacin 13)
Length = 527
Score = 32.7 bits (73), Expect = 0.27
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +3
Query: 144 GDCVDSRPDCGFLKERGDCDKMYE-----KICRKTCGVC 245
G C D R DC FL G C+ + + C +CG C
Sbjct: 443 GKCEDRRKDCEFLARAGHCESRFSIRFMTENCANSCGKC 481
>sp|P53971|YNC3_YEAST Hypothetical 108.5 kDa protein in UME3-HDA1 intergenic region
Length = 965
Score = 32.7 bits (73), Expect = 0.27
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +3
Query: 48 CADVDSDCGSKTAEECISP--DVYGKCEKSCHLCGDCVDSRPDCGFLKERGDCDKMYEKI 221
C D CG K C P Y C+K+CHL G+C +K+
Sbjct: 568 CFQTDVSCGIK----CGIPLSYCYHTCQKTCHLPGNC--------------------QKV 603
Query: 222 CRKTCG 239
C++TCG
Sbjct: 604 CKQTCG 609
>sp|Q58344|Y934_METJA Hypothetical polyferredoxin-like protein MJ0934
Length = 209
Score = 32.3 bits (72), Expect = 0.35
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 123 EKSCHLCGDCVDSRPDCGFLKERG--DCDKMYEKICRKTCGVC 245
E C +CG CVD P+ +K+R D DK C K CGVC
Sbjct: 69 ETICSVCGTCVDVCPNNAIIKDRFTIDADK-----CTK-CGVC 105
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,236,970
Number of Sequences: 369166
Number of extensions: 624174
Number of successful extensions: 2934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2921
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)