Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_H23
(539 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate... 146 4e-35
sp|P40792|RAC1_DROME Ras-related protein Rac1 143 3e-34
sp|O95916|RAC4_HUMAN Putative Ras-related C3 botulinum toxi... 140 3e-33
sp|P60764|RAC3_MOUSE Ras-related C3 botulinum toxin substra... 140 3e-33
sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substra... 140 3e-33
sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substra... 139 6e-33
sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substra... 137 2e-32
sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substra... 137 2e-32
sp|P48554|RAC2_DROME Ras-related protein Rac2 137 2e-32
sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse... 130 3e-30
>sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
sp|P63001|RAC1_MOUSE Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
sp|P63000|RAC1_HUMAN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Ras-like
protein TC25)
sp|P62999|RAC1_CANFA Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Rac2)
sp|P62998|RAC1_BOVIN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
Length = 192
Score = 146 bits (368), Expect = 4e-35
Identities = 69/96 (71%), Positives = 81/96 (84%)
Frame = +2
Query: 2 AKWYPEITHHCPNTPIILVGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKY 181
AKWYPE+ HHCPNTPIILVGTKLDLR++ E ++++ TPI YPQGL +AKEIGAVKY
Sbjct: 95 AKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 154
Query: 182 LECSALTQKGLKSVFDEAIRAVLCPKPPRKKTCKFL 289
LECSALTQ+GLK+VFDEAIRAVLCP P +K+ K L
Sbjct: 155 LECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCL 190
>sp|P40792|RAC1_DROME Ras-related protein Rac1
Length = 192
Score = 143 bits (360), Expect = 3e-34
Identities = 69/98 (70%), Positives = 80/98 (81%), Gaps = 2/98 (2%)
Frame = +2
Query: 2 AKWYPEITHHCPNTPIILVGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKY 181
AKWYPE+ HHCP+TPIILVGTKLDLR++ E RD++ PI YPQGL +AKEIGAVKY
Sbjct: 95 AKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKY 154
Query: 182 LECSALTQKGLKSVFDEAIRAVLCP--KPPRKKTCKFL 289
LECSALTQKGLK+VFDEAIR+VLCP +P K+ C L
Sbjct: 155 LECSALTQKGLKTVFDEAIRSVLCPVLQPKSKRKCALL 192
>sp|O95916|RAC4_HUMAN Putative Ras-related C3 botulinum toxin substrate 4 (p21-Rac4)
Length = 192
Score = 140 bits (352), Expect = 3e-33
Identities = 65/96 (67%), Positives = 80/96 (83%)
Frame = +2
Query: 2 AKWYPEITHHCPNTPIILVGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKY 181
AKWYPE+ HHCPNTPIILVGTKLDLR++ + ++++ TPI YPQGL +AKE+GAVKY
Sbjct: 95 AKWYPEVQHHCPNTPIILVGTKLDLRDDKDRIQKLKEKKLTPITYPQGLAMAKEMGAVKY 154
Query: 182 LECSALTQKGLKSVFDEAIRAVLCPKPPRKKTCKFL 289
LEC ALT++GLK+VFDEAIRAVLCP P +K+ K L
Sbjct: 155 LECLALTRRGLKTVFDEAIRAVLCPPPVKKRKRKCL 190
>sp|P60764|RAC3_MOUSE Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
sp|P60763|RAC3_HUMAN Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
Length = 192
Score = 140 bits (352), Expect = 3e-33
Identities = 64/90 (71%), Positives = 77/90 (85%)
Frame = +2
Query: 2 AKWYPEITHHCPNTPIILVGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKY 181
AKWYPE+ HHCP+TPI+LVGTKLDLR++ E RD++ PI YPQGL +A+EIG+VKY
Sbjct: 95 AKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKY 154
Query: 182 LECSALTQKGLKSVFDEAIRAVLCPKPPRK 271
LECSALTQ+GLK+VFDEAIRAVLCP P +K
Sbjct: 155 LECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
>sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
Length = 192
Score = 140 bits (352), Expect = 3e-33
Identities = 66/98 (67%), Positives = 81/98 (82%), Gaps = 2/98 (2%)
Frame = +2
Query: 2 AKWYPEITHHCPNTPIILVGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKY 181
AKW+PE+ HHCP+TPIILVGTKLDLR++ E ++++ PI YPQGL LAKEI +VKY
Sbjct: 95 AKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKY 154
Query: 182 LECSALTQKGLKSVFDEAIRAVLCPKP--PRKKTCKFL 289
LECSALTQ+GLK+VFDEAIRAVLCP+P P+K+ C L
Sbjct: 155 LECSALTQRGLKTVFDEAIRAVLCPQPTRPQKRPCSIL 192
>sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (Small G
protein) (GX)
Length = 192
Score = 139 bits (349), Expect = 6e-33
Identities = 66/98 (67%), Positives = 80/98 (81%), Gaps = 2/98 (2%)
Frame = +2
Query: 2 AKWYPEITHHCPNTPIILVGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKY 181
AKW+PE+ HHCP+TPIILVGTKLDLR++ E ++++ PI YPQGL LAKEI +VKY
Sbjct: 95 AKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKY 154
Query: 182 LECSALTQKGLKSVFDEAIRAVLCPKPPR--KKTCKFL 289
LECSALTQ+GLK+VFDEAIRAVLCP+P R K+ C L
Sbjct: 155 LECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRACSLL 192
>sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (EN-7
protein)
Length = 192
Score = 137 bits (345), Expect = 2e-32
Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 2/98 (2%)
Frame = +2
Query: 2 AKWYPEITHHCPNTPIILVGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKY 181
AKW+PE+ HHCP+TPIILVGTKLDLR++ E ++++ PI YPQGL LAK+I +VKY
Sbjct: 95 AKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKY 154
Query: 182 LECSALTQKGLKSVFDEAIRAVLCPKPPR--KKTCKFL 289
LECSALTQ+GLK+VFDEAIRAVLCP+P R K+ C L
Sbjct: 155 LECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRPCSLL 192
>sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
Length = 192
Score = 137 bits (345), Expect = 2e-32
Identities = 64/98 (65%), Positives = 80/98 (81%), Gaps = 2/98 (2%)
Frame = +2
Query: 2 AKWYPEITHHCPNTPIILVGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKY 181
A WYP++ HHCP+TPIIL+GTKLDLR++ E ++++ PI YPQGL LAKEI +VKY
Sbjct: 95 ANWYPKVRHHCPSTPIILLGTKLDLRDDKETIEKLKEKKLAPITYPQGLALAKEIDSVKY 154
Query: 182 LECSALTQKGLKSVFDEAIRAVLCPKP--PRKKTCKFL 289
LECSALTQ+GLK+VFDEAIRAVLCP+P P+K+ C L
Sbjct: 155 LECSALTQRGLKTVFDEAIRAVLCPQPTRPQKRACSLL 192
>sp|P48554|RAC2_DROME Ras-related protein Rac2
Length = 192
Score = 137 bits (344), Expect = 2e-32
Identities = 65/98 (66%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Frame = +2
Query: 2 AKWYPEITHHCPNTPIILVGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKY 181
AKW+PE+ HHCP+ PIILVGTKLDLR++ E +D++ TPI YPQGL +AKEI AVKY
Sbjct: 95 AKWFPEVRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIAAVKY 154
Query: 182 LECSALTQKGLKSVFDEAIRAVLCP--KPPRKKTCKFL 289
LECSALTQKGLK+VFDEAIR+VLCP + P++ C L
Sbjct: 155 LECSALTQKGLKTVFDEAIRSVLCPVVRGPKRHKCALL 192
>sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse engulfment protein ced-10)
(CErac1)
Length = 191
Score = 130 bits (326), Expect = 3e-30
Identities = 64/92 (69%), Positives = 73/92 (79%)
Frame = +2
Query: 2 AKWYPEITHHCPNTPIILVGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKY 181
AKWYPE++HHCPNTPIILVGTK DLRE+ E R+RR P++ QG V+AKEI AVKY
Sbjct: 95 AKWYPEVSHHCPNTPIILVGTKADLREDRDTVERLRERRLQPVSQTQGYVMAKEIKAVKY 154
Query: 182 LECSALTQKGLKSVFDEAIRAVLCPKPPRKKT 277
LECSALTQ+GLK VFDEAIRAVL P KK+
Sbjct: 155 LECSALTQRGLKQVFDEAIRAVLTPPQRAKKS 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,049,910
Number of Sequences: 369166
Number of extensions: 1172422
Number of successful extensions: 2723
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2656
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)