Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_H22
(443 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 87 2e-17
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 86 4e-17
sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) 84 1e-16
sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2) 84 2e-16
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 81 9e-16
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 80 2e-15
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 80 2e-15
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 80 2e-15
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 80 2e-15
sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 79 4e-15
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 86.7 bits (213), Expect = 2e-17
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
Frame = +2
Query: 2 ETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILP 181
++ PGEVIK +++ I++EGMP Y+ PF +G+L I F V FP++ L D+ L S+L
Sbjct: 302 KSNPGEVIKPDQFKGINDEGMPMYQRPFMRGKLYIHFSVDFPDS--LTPDQCKALESVL- 358
Query: 182 PSQFSSSLDNMK--EAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQ 355
PS+ +S L +M+ E EE +H D ++ + ++ + YD DDEG GGAQRVQ
Sbjct: 359 PSRNASRLTDMEIDECEETTMH--DVNIEEEMRRKQHQQAQEAYDEDDEG--HGGAQRVQ 414
Query: 356 CA 361
CA
Sbjct: 415 CA 416
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 85.9 bits (211), Expect = 4e-17
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Frame = +2
Query: 2 ETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILP 181
++ PGEV+K +++AI++EGMP Y+ PF +G+L IQF V FP++ L D+ + S+LP
Sbjct: 281 KSNPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIQFLVDFPDS--LTPDQCKVIESVLP 338
Query: 182 PSQFSSSLD-NMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQC 358
S S D + E EE +H D ++ + ++ YD DDEG GG QRVQC
Sbjct: 339 RSASSQLTDMEIDECEETTMH--DVNIEEEMRRKQHQHAQEAYDEDDEG--HGGGQRVQC 394
Query: 359 A 361
A
Sbjct: 395 A 395
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)
Length = 420
Score = 84.0 bits (206), Expect = 1e-16
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = +2
Query: 2 ETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILP 181
++ PGEV+K Y+AI +EGMP Y+ PF +G+L I F V FP++ L D+ L ++LP
Sbjct: 302 KSNPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPDS--LSPDQTKALEAVLP 359
Query: 182 -PSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQC 358
PS S + E EE LH D ++ + + +R D D++ PGGAQRVQC
Sbjct: 360 KPSTAQLSDMEIDECEETTLH--DVNIEDEMRRKAQAQREAYDDDDEDDDHPGGAQRVQC 417
Query: 359 A 361
A
Sbjct: 418 A 418
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2)
Length = 419
Score = 83.6 bits (205), Expect = 2e-16
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Frame = +2
Query: 2 ETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILP 181
++KPGEV+K Y+AI +EGMP Y+ PF +G+L I F V FPE+ L D+ + ++LP
Sbjct: 303 KSKPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPES--LSPDQTKAIEAVLP 360
Query: 182 -PSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQC 358
P++ + S + + EE LH + + + + + YD DDE PGGAQRVQC
Sbjct: 361 KPTKAAISDMEIDDCEETTLHDVN---IEDEMKRKAQAQREAYD-DDEEDHPGGAQRVQC 416
Query: 359 A 361
A
Sbjct: 417 A 417
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 81.3 bits (199), Expect = 9e-16
Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Frame = +2
Query: 11 PGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQ 190
PGEV+K +++AI++EGMP Y+ PF +G+L I F V FP++ L ++ L +LPP +
Sbjct: 303 PGEVVKPDQFKAINDEGMPMYQRPFMKGKLYIHFSVEFPDS--LNPEQCKALEGVLPP-R 359
Query: 191 FSSSLDNMK--EAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 361
S L +M+ E EE LH N + + R + YD D++ M GGAQRVQCA
Sbjct: 360 TSVQLSDMELDECEETTLHD-----VNIEEEMRRKQAQEAYDEDED--MHGGAQRVQCA 411
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 80.5 bits (197), Expect = 2e-15
Identities = 47/118 (39%), Positives = 68/118 (57%)
Frame = +2
Query: 5 TKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPP 184
+K GEVIK+ + + I NEGMP YK+P E+G +IIQF VVFPE +L +KL +L ++LPP
Sbjct: 290 SKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFPEKQWLSQEKLPQLEALLPP 349
Query: 185 SQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQC 358
Q D+M + E L ++P ++ + + Y+ DDE G VQC
Sbjct: 350 RQKVRITDDMDQVE---LKEFNP------NEQSWRQHREAYEEDDEEPRAG----VQC 394
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 80.1 bits (196), Expect = 2e-15
Identities = 45/112 (40%), Positives = 64/112 (57%)
Frame = +2
Query: 11 PGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQ 190
PG+++K+ + + + NEGMP Y+ P+E+GRLII+F V FPEN FL DKL+ L +LP +
Sbjct: 291 PGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK 350
Query: 191 FSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQ 346
D M + E L +DP+ + R H Y+ DDE GG Q
Sbjct: 351 EVEETDEMDQVE---LVDFDPN-----QERRRHYNGEAYE-DDEHHPRGGVQ 393
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 80.1 bits (196), Expect = 2e-15
Identities = 45/112 (40%), Positives = 64/112 (57%)
Frame = +2
Query: 11 PGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQ 190
PG+++K+ + + + NEGMP Y+ P+E+GRLII+F V FPEN FL DKL+ L +LP +
Sbjct: 291 PGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK 350
Query: 191 FSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQ 346
D M + E L +DP+ + R H Y+ DDE GG Q
Sbjct: 351 EVEETDEMDQVE---LVDFDPN-----QERRRHYNGEAYE-DDEHHPRGGVQ 393
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 80.1 bits (196), Expect = 2e-15
Identities = 46/118 (38%), Positives = 69/118 (58%)
Frame = +2
Query: 5 TKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPP 184
+K GEVIK+ + R + +EGMP YK+P E+G LIIQF V+FPE ++L +KL +L ++LPP
Sbjct: 290 SKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFPEKHWLSLEKLPQLEALLPP 349
Query: 185 SQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQC 358
Q D+M + E L + P+ N + + Y+ D++G G VQC
Sbjct: 350 RQKVRITDDMDQVE---LKEFCPNEQN------WRQHREAYEEDEDGPQAG----VQC 394
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1
Length = 417
Score = 79.0 bits (193), Expect = 4e-15
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Frame = +2
Query: 14 GEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVFPENNFLPTDKLNKLRSILPPS-Q 190
GEV+K +++AI++EGMP Y+ PF +G++ I F V FP++ L D++ L +ILPP
Sbjct: 306 GEVVKPDQFKAIEDEGMPIYQRPFMKGKMYIHFTVEFPDS--LNPDQVKSLEAILPPKPS 363
Query: 191 FSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 361
S + + E EE LH + ++ + + + YD DDE P G QRVQCA
Sbjct: 364 MSLTYMELDECEETTLH--NVNIEEEMKRKQTQAQQEAYDEDDE---PAGGQRVQCA 415
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,014,302
Number of Sequences: 369166
Number of extensions: 968354
Number of successful extensions: 2773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2760
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)