Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_H19
(780 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O89046|COR1B_RAT Coronin-1B (Coronin-2) 311 2e-84
sp|Q9XS70|COR1B_RABIT Coronin-1B (Coroninse) (Coronin-like ... 310 3e-84
sp|Q9BR76|CO1B_HUMAN Coronin-1B (Coronin-2) 310 4e-84
sp|Q9WUM3|COR1B_MOUSE Coronin-1B (Coronin-2) 309 6e-84
sp|Q9ULV4|COR1C_HUMAN Coronin-1C (Coronin-3) (hCRNN4) 303 5e-82
sp|Q9WUM4|COR1C_MOUSE Coronin-1C (Coronin-3) 301 2e-81
sp|Q920M5|CORO6_MOUSE Coronin-6 (Clipin E) 299 5e-81
sp|Q920J3|CORO6_RAT Coronin-6 291 1e-78
sp|O89053|COR1A_MOUSE Coronin-1A (Coronin-like protein p57)... 283 5e-76
sp|Q92176|COR1A_BOVIN Coronin-1A (Coronin-like protein p57)... 282 6e-76
>sp|O89046|COR1B_RAT Coronin-1B (Coronin-2)
Length = 484
Score = 311 bits (796), Expect = 2e-84
Identities = 142/250 (56%), Positives = 188/250 (75%), Gaps = 3/250 (1%)
Frame = +3
Query: 18 RRSKFKHIFGKALKRDECYDCIRITKSSWDSTFCSVNPKYLAIITEAAGGGAFLVIPIEK 197
R+SKF+H+FG+ +K D+CY+ IR+++ +WDSTFC+VNPK+LA+I EA+GGGAF+V+P+ K
Sbjct: 8 RQSKFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFMVLPLNK 67
Query: 198 TGRQEADIPLVAGHKAAVLDIQFCPHNDDVIASASEDCTVKVWSIPEDWLQEKTNLTEPI 377
TGR + P V GH VLDI +CPHND+VIAS SEDCTV VW IPE+ L + LTEP+
Sbjct: 68 TGRIDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGL--TSPLTEPV 125
Query: 378 ANLVGHQRRVGLVLWHPTAENVLLSSGADNLVMLWNVNTEEVLVEIS--FPDMIISASFN 551
L GH +RVG++ WHPTA NVLLS+G DN+V++WNV T E L + PD+I + S+N
Sbjct: 126 VVLEGHTKRVGIITWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDSLHPDLIYNVSWN 185
Query: 552 YNGSKLVTSCKDKYTRVVDPRSGDIKTE-GKCHEGAKPQQCVYLKDDRIFTTGFSRMSER 728
+NGS T+CKDK R++DPR G + E K HEGA+P + ++L D ++FT GFSRMSER
Sbjct: 186 HNGSLFCTACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTAGFSRMSER 245
Query: 729 QFALWDDNNF 758
Q ALWD NF
Sbjct: 246 QLALWDPENF 255
>sp|Q9XS70|COR1B_RABIT Coronin-1B (Coroninse) (Coronin-like protein pp66)
Length = 486
Score = 310 bits (794), Expect = 3e-84
Identities = 144/249 (57%), Positives = 187/249 (75%), Gaps = 3/249 (1%)
Frame = +3
Query: 18 RRSKFKHIFGKALKRDECYDCIRITKSSWDSTFCSVNPKYLAIITEAAGGGAFLVIPIEK 197
R+SKF+H+FG+ +K D+CY+ IR+++ +WDSTFC+VNPK+LA+I EA+GGGAFLV+P+ K
Sbjct: 8 RQSKFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFLVLPLSK 67
Query: 198 TGRQEADIPLVAGHKAAVLDIQFCPHNDDVIASASEDCTVKVWSIPEDWLQEKTNLTEPI 377
TGR + P V GH VLDI++CPHND VIAS SEDCTV VW IPED L + LTEP+
Sbjct: 68 TGRIDKAYPTVCGHTGPVLDIEWCPHNDGVIASGSEDCTVMVWQIPEDGL--TSPLTEPV 125
Query: 378 ANLVGHQRRVGLVLWHPTAENVLLSSGADNLVMLWNVNTEEVLVEIS--FPDMIISASFN 551
L GH +RVG+V WHPTA NVLLS+G DN+V++WNV T E L + PD+I + S+N
Sbjct: 126 VVLEGHTKRVGIVTWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDSLHPDLIYNVSWN 185
Query: 552 YNGSKLVTSCKDKYTRVVDPRSGDIKTE-GKCHEGAKPQQCVYLKDDRIFTTGFSRMSER 728
NGS ++CKDK R++DPR G + E K HEGA+P + ++L D ++FTTGFSRMSER
Sbjct: 186 RNGSLFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSER 245
Query: 729 QFALWDDNN 755
Q ALWD N
Sbjct: 246 QLALWDPEN 254
>sp|Q9BR76|CO1B_HUMAN Coronin-1B (Coronin-2)
Length = 489
Score = 310 bits (793), Expect = 4e-84
Identities = 142/249 (57%), Positives = 188/249 (75%), Gaps = 3/249 (1%)
Frame = +3
Query: 18 RRSKFKHIFGKALKRDECYDCIRITKSSWDSTFCSVNPKYLAIITEAAGGGAFLVIPIEK 197
R+SKF+H+FG+ +K D+CY+ IR+++ +WDSTFC+VNPK+LA+I EA+GGGAFLV+P+ K
Sbjct: 8 RQSKFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFLVLPLSK 67
Query: 198 TGRQEADIPLVAGHKAAVLDIQFCPHNDDVIASASEDCTVKVWSIPEDWLQEKTNLTEPI 377
TGR + P V GH VLDI +CPHND+VIAS SEDCTV VW IPE+ L + LTEP+
Sbjct: 68 TGRIDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGL--TSPLTEPV 125
Query: 378 ANLVGHQRRVGLVLWHPTAENVLLSSGADNLVMLWNVNTEEVLVEIS--FPDMIISASFN 551
L GH +RVG++ WHPTA NVLLS+G DN+V++WNV T E L + PD+I + S+N
Sbjct: 126 VVLEGHTKRVGIIAWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDSLHPDLIYNVSWN 185
Query: 552 YNGSKLVTSCKDKYTRVVDPRSGDIKTE-GKCHEGAKPQQCVYLKDDRIFTTGFSRMSER 728
+NGS ++CKDK R++DPR G + E K HEGA+P + ++L D ++FTTGFSRMSER
Sbjct: 186 HNGSLFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSER 245
Query: 729 QFALWDDNN 755
Q ALWD N
Sbjct: 246 QLALWDPEN 254
>sp|Q9WUM3|COR1B_MOUSE Coronin-1B (Coronin-2)
Length = 484
Score = 309 bits (791), Expect = 6e-84
Identities = 141/249 (56%), Positives = 188/249 (75%), Gaps = 3/249 (1%)
Frame = +3
Query: 18 RRSKFKHIFGKALKRDECYDCIRITKSSWDSTFCSVNPKYLAIITEAAGGGAFLVIPIEK 197
R+SKF+H+FG+ +K D+CY+ IR+++ +WDSTFC+VNPK+LA+I EA+GGGAF+V+P+ K
Sbjct: 8 RQSKFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFMVLPLNK 67
Query: 198 TGRQEADIPLVAGHKAAVLDIQFCPHNDDVIASASEDCTVKVWSIPEDWLQEKTNLTEPI 377
TGR + P V GH VLDI +CPHND+VIAS SEDCTV VW IPE+ L + LTEP+
Sbjct: 68 TGRIDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGL--TSPLTEPV 125
Query: 378 ANLVGHQRRVGLVLWHPTAENVLLSSGADNLVMLWNVNTEEVLVEIS--FPDMIISASFN 551
L GH +RVG++ WHPTA NVLLS+G DN+V++WNV T E L + PD+I + S+N
Sbjct: 126 VVLEGHTKRVGIITWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDSLHPDLIYNVSWN 185
Query: 552 YNGSKLVTSCKDKYTRVVDPRSGDIKTE-GKCHEGAKPQQCVYLKDDRIFTTGFSRMSER 728
+NGS ++CKDK R++DPR G + E K HEGA+P + ++L D ++FTTGFSRMSER
Sbjct: 186 HNGSLFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSER 245
Query: 729 QFALWDDNN 755
Q ALWD N
Sbjct: 246 QLALWDPEN 254
>sp|Q9ULV4|COR1C_HUMAN Coronin-1C (Coronin-3) (hCRNN4)
Length = 474
Score = 303 bits (775), Expect = 5e-82
Identities = 142/249 (57%), Positives = 185/249 (74%), Gaps = 3/249 (1%)
Frame = +3
Query: 18 RRSKFKHIFGKALKRDECYDCIRITKSSWDSTFCSVNPKYLAIITEAAGGGAFLVIPIEK 197
R+SKF+H+FG+A+K D+CYD IR+++ +WDS+FC+VNP+++AII EA+GGGAFLV+P+ K
Sbjct: 6 RQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHK 65
Query: 198 TGRQEADIPLVAGHKAAVLDIQFCPHNDDVIASASEDCTVKVWSIPEDWLQEKTNLTEPI 377
TGR + P V GH VLDI +CPHND VIAS SEDCTV VW IPE+ L +LTEP+
Sbjct: 66 TGRIDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGL--TLSLTEPV 123
Query: 378 ANLVGHQRRVGLVLWHPTAENVLLSSGADNLVMLWNVNTEEVLVEIS--FPDMIISASFN 551
L GH +RVG+V WHPTA NVLLS+G DN +++WNV T E L+ + DMI + S+N
Sbjct: 124 VILEGHSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWN 183
Query: 552 YNGSKLVTSCKDKYTRVVDPRSGDIKTE-GKCHEGAKPQQCVYLKDDRIFTTGFSRMSER 728
NGS + T+ KDK RV+DPR +I E K HEGA+P + ++L D +FTTGFSRMSER
Sbjct: 184 RNGSLICTASKDKKVRVIDPRKQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSER 243
Query: 729 QFALWDDNN 755
Q ALW+ N
Sbjct: 244 QLALWNPKN 252
>sp|Q9WUM4|COR1C_MOUSE Coronin-1C (Coronin-3)
Length = 474
Score = 301 bits (770), Expect = 2e-81
Identities = 141/249 (56%), Positives = 185/249 (74%), Gaps = 3/249 (1%)
Frame = +3
Query: 18 RRSKFKHIFGKALKRDECYDCIRITKSSWDSTFCSVNPKYLAIITEAAGGGAFLVIPIEK 197
R+SKF+H+FG+A+K D+CYD IR+++ +WDS+FC+VNP+++AII EA+GGGAFLV+P+ K
Sbjct: 6 RQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHK 65
Query: 198 TGRQEADIPLVAGHKAAVLDIQFCPHNDDVIASASEDCTVKVWSIPEDWLQEKTNLTEPI 377
TGR + P V GH VLDI +CPHND VIAS SEDCTV VW IPE+ L +LTEP+
Sbjct: 66 TGRIDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGL--TLSLTEPV 123
Query: 378 ANLVGHQRRVGLVLWHPTAENVLLSSGADNLVMLWNVNTEEVLVEIS--FPDMIISASFN 551
L GH +RVG+V WHPTA NVLLS+G DN +++WNV T E L+ + DMI + S++
Sbjct: 124 VILEGHSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWS 183
Query: 552 YNGSKLVTSCKDKYTRVVDPRSGDIKTE-GKCHEGAKPQQCVYLKDDRIFTTGFSRMSER 728
NGS + T+ KDK RV+DPR +I E K HEGA+P + ++L D +FTTGFSRMSER
Sbjct: 184 RNGSLICTASKDKKVRVIDPRKQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSER 243
Query: 729 QFALWDDNN 755
Q ALW+ N
Sbjct: 244 QLALWNPKN 252
>sp|Q920M5|CORO6_MOUSE Coronin-6 (Clipin E)
Length = 471
Score = 299 bits (766), Expect = 5e-81
Identities = 140/250 (56%), Positives = 185/250 (74%), Gaps = 3/250 (1%)
Frame = +3
Query: 18 RRSKFKHIFGKALKRDECYDCIRITKSSWDSTFCSVNPKYLAIITEAAGGGAFLVIPIEK 197
R+SKF+H+FG+A K D+ Y+ IR++K +WDS FC+VNPK+LAII EA GGGAF+V+P+ K
Sbjct: 7 RQSKFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAK 66
Query: 198 TGRQEADIPLVAGHKAAVLDIQFCPHNDDVIASASEDCTVKVWSIPEDWLQEKTNLTEPI 377
TGR + + PLV GH VLDI +CPHND+VIASAS+D TV VW IP+ N+TEP+
Sbjct: 67 TGRVDKNYPLVTGHTGPVLDIDWCPHNDNVIASASDDTTVMVWQIPD--YTPVRNITEPV 124
Query: 378 ANLVGHQRRVGLVLWHPTAENVLLSSGADNLVMLWNVNTEEVLVEIS--FPDMIISASFN 551
L GH +RVG++ WHPTA NVLLS+G DN++++WNV T EVL+ + PD+I S +N
Sbjct: 125 ITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDIHPDVIHSVCWN 184
Query: 552 YNGSKLVTSCKDKYTRVVDPRSGDIKTE-GKCHEGAKPQQCVYLKDDRIFTTGFSRMSER 728
NGS L T+CKDK R++DPR + E + HEGA+P + V+ D ++ +TGFSRMSER
Sbjct: 185 SNGSLLATTCKDKTLRIIDPRKSQVVAERARPHEGARPLRAVFTADGKLLSTGFSRMSER 244
Query: 729 QFALWDDNNF 758
Q ALWD NNF
Sbjct: 245 QLALWDPNNF 254
>sp|Q920J3|CORO6_RAT Coronin-6
Length = 472
Score = 291 bits (745), Expect = 1e-78
Identities = 135/250 (54%), Positives = 181/250 (72%), Gaps = 3/250 (1%)
Frame = +3
Query: 18 RRSKFKHIFGKALKRDECYDCIRITKSSWDSTFCSVNPKYLAIITEAAGGGAFLVIPIEK 197
R+SKF+H+FG+A K D+ Y+ IR++K +WDS FC+VNPK+LAII EA GGGAF+V+P+ K
Sbjct: 7 RQSKFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAK 66
Query: 198 TGRQEADIPLVAGHKAAVLDIQFCPHNDDVIASASEDCTVKVWSIPEDWLQEKTNLTEPI 377
TGR + + PL+ GH VLDI +CPHND+VIAS S+D TV VW IP+ N+TEP+
Sbjct: 67 TGRVDKNYPLITGHTGPVLDIDWCPHNDNVIASPSDDTTVMVWQIPD--YTPVRNITEPV 124
Query: 378 ANLVGHQRRVGLVLWHPTAENVLLSSGADNLVMLWNVNTEEVLVEIS--FPDMIISASFN 551
L GH +RVG++ WHPTA NVLLS+G DN++++WNV T EVL+ + PD+I S +N
Sbjct: 125 ITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDIHPDVIHSVCWN 184
Query: 552 YNGSKLVTSCKDKYTRVVDPRSGDIKTEG-KCHEGAKPQQCVYLKDDRIFTTGFSRMSER 728
NGS L T+CKDK R++DPR + E HEG +P + V+ + IFTTGF+RMS+R
Sbjct: 185 SNGSLLATTCKDKTLRIIDPRKSQVVAERFAAHEGMRPMRAVFTRLGHIFTTGFTRMSQR 244
Query: 729 QFALWDDNNF 758
+ LWD NNF
Sbjct: 245 ELGLWDPNNF 254
>sp|O89053|COR1A_MOUSE Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 283 bits (723), Expect = 5e-76
Identities = 130/247 (52%), Positives = 182/247 (73%), Gaps = 4/247 (1%)
Frame = +3
Query: 18 RRSKFKHIFGKALKRDECYDCIRITKSSWDSTFCSVNPKYLAIITEAAGGGAFLVIPIEK 197
R SKF+H+FG+ K D+CY+ +R+++++WDS FC+VNPK++A+I EA+GGGAFLV+P+ K
Sbjct: 7 RSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGK 66
Query: 198 TGRQEADIPLVAGHKAAVLDIQFCPHNDDVIASASEDCTVKVWSIPEDWLQEKTNLTEPI 377
TGR + ++PLV GH A VLDI +CPHND+VIAS SEDCTV VW IP+ L L EP+
Sbjct: 67 TGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL--VLPLREPV 124
Query: 378 ANLVGHQRRVGLVLWHPTAENVLLSSGADNLVMLWNVNTEEVLVEIS---FPDMIISASF 548
L GH +RVG+V WHPTA+NVLLS+G DN++++W+V T ++ + PD I S +
Sbjct: 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW 184
Query: 549 NYNGSKLVTSCKDKYTRVVDPRSGDIKTE-GKCHEGAKPQQCVYLKDDRIFTTGFSRMSE 725
+ +G+ + TSC+DK RV++PR G + E + HEG +P V++ + +I TTGFSRMSE
Sbjct: 185 SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE 244
Query: 726 RQFALWD 746
RQ ALWD
Sbjct: 245 RQVALWD 251
>sp|Q92176|COR1A_BOVIN Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 282 bits (722), Expect = 6e-76
Identities = 129/247 (52%), Positives = 183/247 (74%), Gaps = 4/247 (1%)
Frame = +3
Query: 18 RRSKFKHIFGKALKRDECYDCIRITKSSWDSTFCSVNPKYLAIITEAAGGGAFLVIPIEK 197
R SKF+H+FG+ K D+CY+ +R+++++WDS FC+VNPK++A+I EA+GGGAFLV+P+ K
Sbjct: 7 RSSKFRHVFGQPAKADQCYEDVRVSQNTWDSGFCAVNPKFVALICEASGGGAFLVLPLGK 66
Query: 198 TGRQEADIPLVAGHKAAVLDIQFCPHNDDVIASASEDCTVKVWSIPEDWLQEKTNLTEPI 377
TGR + ++P+V GH A VLDI +CPHND+VIAS SEDC+V VW IP+ L L EP+
Sbjct: 67 TGRVDKNVPMVCGHTAPVLDIAWCPHNDNVIASGSEDCSVMVWEIPDGGL--TLPLREPV 124
Query: 378 ANLVGHQRRVGLVLWHPTAENVLLSSGADNLVMLWNVNTEEVLVEIS---FPDMIISASF 548
L GH +RVG+V WHPTA+NVLLS+G DN++++W+V T ++ + PD I S +
Sbjct: 125 VTLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGVAVLTLGSDVHPDTIYSVDW 184
Query: 549 NYNGSKLVTSCKDKYTRVVDPRSGDIKTE-GKCHEGAKPQQCVYLKDDRIFTTGFSRMSE 725
+ +G+ + TSC+DK R+++PR G I E + HEG +P + V++ D +I TTGFSRMSE
Sbjct: 185 SRDGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKILTTGFSRMSE 244
Query: 726 RQFALWD 746
RQ ALWD
Sbjct: 245 RQVALWD 251
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,584,520
Number of Sequences: 369166
Number of extensions: 1692190
Number of successful extensions: 6132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5708
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)