Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_H09
(869 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C (Rab6-like... 32 2.3
sp|P24408|RAB9A_CANFA Ras-related protein Rab-9A (Rab-9) 31 3.9
sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B >gi|471170... 31 3.9
sp|P51151|RAB9A_HUMAN Ras-related protein Rab-9A (Rab-9) 31 3.9
sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A (Rab-6) 31 3.9
sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A (Rab-6) 31 3.9
sp|Q9R0M6|RAB9A_MOUSE Ras-related protein Rab-9A (Rab-9) (S... 31 3.9
sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 31 3.9
sp|Q99P75|RAB9A_RAT Ras-related protein Rab-9A (Rab-9) 31 3.9
sp|O00194|RB27B_HUMAN Ras-related protein Rab-27B (C25KG) 31 5.1
>sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C (Rab6-like protein WTH3)
Length = 254
Score = 32.0 bits (71), Expect = 2.3
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +1
Query: 667 TTAKKDLYTNYKLDIYSQ*Y-------WIYNLGYIRAYFVALQLWDTAGQER 801
+ AK L T ++ D + Y ++ Y+ + L+LWDTAGQER
Sbjct: 23 SVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQER 74
>sp|P24408|RAB9A_CANFA Ras-related protein Rab-9A (Rab-9)
Length = 201
Score = 31.2 bits (69), Expect = 3.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 748 IRAYFVALQLWDTAGQER 801
+ +FV +Q+WDTAGQER
Sbjct: 51 VDGHFVTMQIWDTAGQER 68
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B
sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B
Length = 208
Score = 31.2 bits (69), Expect = 3.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +1
Query: 667 TTAKKDLYTNYKLDIYSQ*Y-------WIYNLGYIRAYFVALQLWDTAGQER 801
+ K L T + D + Y ++ Y+ V LQLWDTAGQER
Sbjct: 23 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 74
>sp|P51151|RAB9A_HUMAN Ras-related protein Rab-9A (Rab-9)
Length = 201
Score = 31.2 bits (69), Expect = 3.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 748 IRAYFVALQLWDTAGQER 801
+ +FV +Q+WDTAGQER
Sbjct: 51 VDGHFVTMQIWDTAGQER 68
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A (Rab-6)
Length = 208
Score = 31.2 bits (69), Expect = 3.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +1
Query: 667 TTAKKDLYTNYKLDIYSQ*Y-------WIYNLGYIRAYFVALQLWDTAGQER 801
+ K L T + D + Y ++ Y+ V LQLWDTAGQER
Sbjct: 23 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 74
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A (Rab-6)
Length = 208
Score = 31.2 bits (69), Expect = 3.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +1
Query: 667 TTAKKDLYTNYKLDIYSQ*Y-------WIYNLGYIRAYFVALQLWDTAGQER 801
+ K L T + D + Y ++ Y+ V LQLWDTAGQER
Sbjct: 23 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 74
>sp|Q9R0M6|RAB9A_MOUSE Ras-related protein Rab-9A (Rab-9) (Sid 99)
Length = 201
Score = 31.2 bits (69), Expect = 3.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 748 IRAYFVALQLWDTAGQER 801
+ +FV +Q+WDTAGQER
Sbjct: 51 VDGHFVTMQIWDTAGQER 68
>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2
Length = 205
Score = 31.2 bits (69), Expect = 3.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +1
Query: 667 TTAKKDLYTNYKLDIYSQ*Y-------WIYNLGYIRAYFVALQLWDTAGQER 801
+ K L T + D + Y ++ Y+ V LQLWDTAGQER
Sbjct: 20 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 71
>sp|Q99P75|RAB9A_RAT Ras-related protein Rab-9A (Rab-9)
Length = 201
Score = 31.2 bits (69), Expect = 3.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 748 IRAYFVALQLWDTAGQER 801
+ +FV +Q+WDTAGQER
Sbjct: 51 VDGHFVTMQIWDTAGQER 68
>sp|O00194|RB27B_HUMAN Ras-related protein Rab-27B (C25KG)
Length = 218
Score = 30.8 bits (68), Expect = 5.1
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1
Query: 751 RAYFVALQLWDTAGQER 801
+A+ V LQLWDTAGQER
Sbjct: 64 KAFKVHLQLWDTAGQER 80
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,364,243
Number of Sequences: 369166
Number of extensions: 2040796
Number of successful extensions: 5401
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5398
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)