Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_H07
(251 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha)... 92 4e-19
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 91 1e-18
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 91 1e-18
sp|O59949|EF1A_YARLI Elongation factor 1-alpha (EF-1-alpha) 90 2e-18
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 89 2e-18
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 89 2e-18
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 89 2e-18
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 88 5e-18
sp|Q01520|EF1A_PODAN Elongation factor 1-alpha (EF-1-alpha) 88 7e-18
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 88 7e-18
>sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha) (Translation elongation
factor 1A) (Eukaryotic elongation factor 1A) (eEF1A)
Length = 458
Score = 92.0 bits (227), Expect = 4e-19
Identities = 44/52 (84%), Positives = 46/52 (88%)
Frame = +3
Query: 6 LEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 161
LED PK KSGDA LV+ VPSKPMCVE FSEYPPLGRFAVRDM+QTVAVGVI
Sbjct: 385 LEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVI 436
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 90.5 bits (223), Expect = 1e-18
Identities = 40/52 (76%), Positives = 48/52 (92%)
Frame = +3
Query: 6 LEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 161
+ED PK KSGDAG++ L+P+KP+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 387 VEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 90.5 bits (223), Expect = 1e-18
Identities = 41/52 (78%), Positives = 48/52 (92%)
Frame = +3
Query: 6 LEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 161
+ED PK K+GDA +VR++PSKPMCVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 385 VEDSPKFVKAGDAAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVI 436
>sp|O59949|EF1A_YARLI Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 89.7 bits (221), Expect = 2e-18
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = +3
Query: 6 LEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 161
+ED PK KSGDA +V++VPSKPMCVE F+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 386 MEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVI 437
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 89.4 bits (220), Expect = 2e-18
Identities = 41/52 (78%), Positives = 46/52 (88%)
Frame = +3
Query: 6 LEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 161
LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 387 LEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 89.4 bits (220), Expect = 2e-18
Identities = 41/52 (78%), Positives = 46/52 (88%)
Frame = +3
Query: 6 LEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 161
LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 387 LEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 89.4 bits (220), Expect = 2e-18
Identities = 41/52 (78%), Positives = 46/52 (88%)
Frame = +3
Query: 6 LEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 161
LED PK KSGDA +V ++P KPMCVETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 387 LEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 88.2 bits (217), Expect = 5e-18
Identities = 39/52 (75%), Positives = 48/52 (92%)
Frame = +3
Query: 6 LEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 161
+EDFPK KSGDAG+V L+P+KP+CVE+F++Y PLGRFAVRDM+QTVAVGVI
Sbjct: 387 VEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVI 438
>sp|Q01520|EF1A_PODAN Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 87.8 bits (216), Expect = 7e-18
Identities = 40/52 (76%), Positives = 47/52 (90%)
Frame = +3
Query: 6 LEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 161
+E+ PK KSGDA +V++VPSKPMCVE F+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 386 VEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVI 437
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 87.8 bits (216), Expect = 7e-18
Identities = 40/52 (76%), Positives = 46/52 (88%)
Frame = +3
Query: 6 LEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 161
LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 387 LEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,030,470
Number of Sequences: 369166
Number of extensions: 378805
Number of successful extensions: 1109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)