Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_H04
(838 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab... 219 7e-57
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (R... 219 7e-57
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 219 1e-56
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Ra... 218 2e-56
sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (... 218 2e-56
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (... 218 2e-56
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (... 218 2e-56
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (... 218 2e-56
sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (R... 217 4e-56
sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (... 217 4e-56
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 219 bits (558), Expect = 7e-57
Identities = 101/164 (61%), Positives = 130/164 (79%)
Frame = +1
Query: 1 VARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIY 180
+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIY
Sbjct: 274 IARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 333
Query: 181 VCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDG 360
VC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + SDL+ P D G
Sbjct: 334 VCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLG 393
Query: 361 VESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 492
+S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 394 TDSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 219 bits (558), Expect = 7e-57
Identities = 101/164 (61%), Positives = 130/164 (79%)
Frame = +1
Query: 1 VARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIY 180
+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIY
Sbjct: 274 IARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 333
Query: 181 VCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDG 360
VC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + SDL+ P D G
Sbjct: 334 VCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLG 393
Query: 361 VESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 492
+S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 394 TDSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 219 bits (557), Expect = 1e-56
Identities = 104/164 (63%), Positives = 125/164 (76%)
Frame = +1
Query: 1 VARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIY 180
VARCK +ICDP YV D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIY
Sbjct: 274 VARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 333
Query: 181 VCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDG 360
VC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLYEPIDDG
Sbjct: 334 VCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDG 393
Query: 361 VESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 492
ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 394 SESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 218 bits (555), Expect = 2e-56
Identities = 103/164 (62%), Positives = 124/164 (75%)
Frame = +1
Query: 1 VARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIY 180
VARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIY
Sbjct: 274 VARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 333
Query: 181 VCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDG 360
VC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F SDLYEPIDDG
Sbjct: 334 VCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDG 393
Query: 361 VESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 492
ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 394 SESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 218 bits (555), Expect = 2e-56
Identities = 103/164 (62%), Positives = 124/164 (75%)
Frame = +1
Query: 1 VARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIY 180
VARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIY
Sbjct: 274 VARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 333
Query: 181 VCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDG 360
VC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F SDLYEPIDDG
Sbjct: 334 VCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDG 393
Query: 361 VESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 492
ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 394 SESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 218 bits (554), Expect = 2e-56
Identities = 103/164 (62%), Positives = 124/164 (75%)
Frame = +1
Query: 1 VARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIY 180
VARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIY
Sbjct: 274 VARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 333
Query: 181 VCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDG 360
VC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F SDLYEPIDDG
Sbjct: 334 VCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDG 393
Query: 361 VESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 492
ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 394 SESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
(Oligophrenin-2)
Length = 447
Score = 218 bits (554), Expect = 2e-56
Identities = 102/164 (62%), Positives = 125/164 (76%)
Frame = +1
Query: 1 VARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIY 180
VARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIY
Sbjct: 274 VARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 333
Query: 181 VCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDG 360
VC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLYEPIDDG
Sbjct: 334 VCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDG 393
Query: 361 VESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 492
ES+VF S SYDATTHFETTC D+ D+YKR G+ FDF ++ K
Sbjct: 394 CESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRK 437
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 218 bits (554), Expect = 2e-56
Identities = 102/164 (62%), Positives = 125/164 (76%)
Frame = +1
Query: 1 VARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIY 180
VARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIY
Sbjct: 274 VARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 333
Query: 181 VCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDG 360
VC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLYEPIDDG
Sbjct: 334 VCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDG 393
Query: 361 VESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 492
ES+VF S SYDATTHFETTC D+ D+YKR G+ FDF ++ K
Sbjct: 394 CESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRK 437
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 217 bits (552), Expect = 4e-56
Identities = 101/164 (61%), Positives = 129/164 (78%)
Frame = +1
Query: 1 VARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIY 180
+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIY
Sbjct: 274 IARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 333
Query: 181 VCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDG 360
VC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + SDL P D G
Sbjct: 334 VCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLG 393
Query: 361 VESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 492
ES++F+S +YDATTHFETTC D+ ++YKR TGSEFDF +++ K
Sbjct: 394 TESQIFISRTYDATTHFETTCDDIKNIYKRMTGSEFDFEEMKRK 437
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 217 bits (552), Expect = 4e-56
Identities = 102/164 (62%), Positives = 124/164 (75%)
Frame = +1
Query: 1 VARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIY 180
VARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIY
Sbjct: 274 VARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 333
Query: 181 VCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDG 360
VC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLYEPIDDG
Sbjct: 334 VCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDG 393
Query: 361 VESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 492
ES+VF S SYDATTHFETTC D+ D+YKR G FDF ++ K
Sbjct: 394 CESQVFCSCSYDATTHFETTCNDIKDIYKRMAGMAFDFENMKRK 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,025,491
Number of Sequences: 369166
Number of extensions: 1947068
Number of successful extensions: 5629
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5626
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)