Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_G21
(314 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q11077|YWV3_CAEEL Hypothetical protein B0403.3 in chromo... 31 1.0
sp|Q24025|SOG_DROME Dorsal-ventral patterning protein Sog (... 31 1.0
sp|Q9YGK5|COLI2_CYPCA Corticotropin-lipotropin II precursor... 30 1.7
sp|Q9N0L8|WAP_MACEU Whey acidic protein precursor (tWAP) 30 2.2
sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphod... 29 3.8
sp|P75302|Y483_MYCPN Hypothetical protein MG335.2 homolog (... 28 5.0
sp|Q9K063|PUR7_NEIMB Phosphoribosylaminoimidazole-succinoca... 28 6.5
sp|P32228|VC04_SWPVK Protein C4 28 6.5
sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromo... 28 6.5
sp|Q88WU9|SYT_LACPL Threonyl-tRNA synthetase (Threonine--tR... 28 6.5
>sp|Q11077|YWV3_CAEEL Hypothetical protein B0403.3 in chromosome X
Length = 272
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 237 HICPNHFYNFQRNLKPQNCSDRFALNRVCHN 145
HIC HF NF RN+ + +D++ + R C N
Sbjct: 110 HICVGHFDNFDRNINCLSLTDKY-VQRECSN 139
>sp|Q24025|SOG_DROME Dorsal-ventral patterning protein Sog (Short gastrulation protein)
Length = 1038
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +3
Query: 78 IVKIQSEETVVECRAKCWDTAVNCD-KLCSTQTDQSSSVVLS------CVENCKSDLDRC 236
I+ E+ ++CR C D+ VNCD K CS T Q + V S + +D C
Sbjct: 957 ILMSHGEQKCIKCR--CKDSKVNCDRKRCSRSTCQQQTRVTSKRRLFEKPDAAAPAIDEC 1014
Query: 237 VQTSC 251
T C
Sbjct: 1015 CSTQC 1019
>sp|Q9YGK5|COLI2_CYPCA Corticotropin-lipotropin II precursor (Pro-opiomelanocortin II)
(POMC II) [Contains: Corticotropin (Adrenocorticotropic
hormone) (ACTH); Melanotropin alpha (Alpha-MSH);
Corticotropin-like intermediary peptide (CLIP);
Lipotropin beta (Beta-LPH); Lipotropin gamma
(Gamma-LPH); Melanotropin beta (Beta-MSH);
Beta-endorphin; Met-enkephalin]
Length = 222
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 111 ECRAKCWDTAVNCDKLCSTQTDQSSSVVLSCVENCKSDL 227
E RA+CW+ A C L TD++ +L+C++ C+SDL
Sbjct: 25 EVRAQCWEDA-RCRDLT---TDEN---ILNCIQLCRSDL 56
>sp|Q9N0L8|WAP_MACEU Whey acidic protein precursor (tWAP)
Length = 191
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Frame = +3
Query: 114 CRAKCWDTAVNCDKLCSTQTDQSSSVVLS-----CVENCKSDLD-----RCVQTSCG 254
C C +T D LC T SSS C + CK+DL +C +SCG
Sbjct: 63 CSWLCMNTTQEKDGLCPVATSHSSSSEEQQRKQLCDKTCKTDLGCEGKAKCCASSCG 119
>sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphodiesterase 3 (E-NPP 3)
(Phosphodiesterase I/nucleotide pyrophosphatase 3)
(Phosphodiesterase I beta) (PD-Ibeta) (RB13-6 antigen)
(B10) [Includes: Alkaline phosphodiesterase I ;
Nucleotide pyrophosphatase (NPPase)]
Length = 875
Score = 28.9 bits (63), Expect = 3.8
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Frame = +3
Query: 12 YRNLYKSYMVKFTTVIFFLVLGIVKIQSEETVVECRAKCWDTA------VNCDKLCSTQT 173
Y+ L + V L LG+ + EE + CR KC+D++ CD C+ +
Sbjct: 21 YKILCAVLLALLVIVSLGLGLGLGLRKPEEHIGSCRKKCFDSSHRGLEGCRCDSGCTDRG 80
Query: 174 DQSSSVVLSCVENCKSDLDRCVQTSCG 254
D +CV++ + + C CG
Sbjct: 81 DCCWDFEDTCVKS--TQIWTCNSFRCG 105
>sp|P75302|Y483_MYCPN Hypothetical protein MG335.2 homolog (P01_orf341)
Length = 341
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 109 WNVELNVGILR*IVTNSVQRKPIRAVLWF*VALKIVKVIWTD 234
WN+ +N + + V R +WF + K KV+W D
Sbjct: 171 WNIVINTAFFKALDLQFVNRFIEDIAVWFPIMFKAQKVLWID 212
>sp|Q9K063|PUR7_NEIMB Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR
synthetase)
Length = 287
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 285 GKIVKKQDSYFHKKFVHICPNHF 217
G+I+ + +++ KK HI PNHF
Sbjct: 48 GEILTQISNFWFKKLAHIMPNHF 70
>sp|P32228|VC04_SWPVK Protein C4
Length = 530
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -1
Query: 179 LIGLR*TEFVTIHRSIPTFSSTFHYCFFRLNFHDPENQEKYDCCKF 42
++ + + ++ HR I + S + Y F +F D N E Y C +
Sbjct: 22 IVSIENNKTISAHRLILSMYSKYFYNIFNSDFIDKNNDEIYICADY 67
>sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromosome III
Length = 1010
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 205 TQLKTTELL*SVCVEQSLSQFTAVSQHLARHSTTVSSD*IFTIPRTRKNMTVVNFTI 35
T K TE + S+ ++ +L+ F +Q +V +FTIP+ K+ +N TI
Sbjct: 143 TTTKVTERIVSMPLDDTLAMFNTTNQE--DKDMSVDRSVLFTIPKVPKHNATMNRTI 197
>sp|Q88WU9|SYT_LACPL Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 654
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 98 FRLNFHDPENQEKY 57
FRL++ DPEN+EKY
Sbjct: 426 FRLSYRDPENKEKY 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,579,467
Number of Sequences: 369166
Number of extensions: 626461
Number of successful extensions: 1623
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)