Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_G19
(426 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63172|DYLX_HUMAN Cytoplasmic dynein light chain (T-comp... 100 1e-21
sp|Q9Z336|DYLX_RAT Cytoplasmic dynein light chain (T-comple... 100 1e-21
sp|P51807|DYLX_MOUSE Cytoplasmic dynein light chain (T-comp... 99 3e-21
sp|Q8SPS9|TCT1L_CANFA T-complex associated-testis-expressed... 98 8e-21
sp|P56387|TCT1L_MOUSE T-complex associated-testis-expressed... 97 1e-20
sp|P51808|TCT1L_HUMAN T-complex associated-testis-expressed... 96 3e-20
sp|Q94524|DYLX_DROME Cytoplasmic dynein light chain (TCTEX-... 88 7e-18
sp|Q9UTS6|DYLX_SCHPO Cytoplasmic dynein light chain (TCTEX-... 35 0.051
sp|Q9PQV5|RPOC_UREPA DNA-directed RNA polymerase beta' chai... 31 1.2
sp|Q9X1Q6|YF70_THEMA Hypothetical protein TM1570 31 1.2
>sp|P63172|DYLX_HUMAN Cytoplasmic dynein light chain (T-complex testis-specific protein 1
homolog) (Protein CW-1)
sp|P63171|DYLX_BOVIN Cytoplasmic dynein light chain (T-complex testis-specific protein 1
homolog)
Length = 113
Score = 100 bits (249), Expect = 1e-21
Identities = 43/103 (41%), Positives = 64/103 (62%)
Frame = +1
Query: 31 TVFVPDEVIEIAKKCISDTLNTATYNRLFVSQWSAVIVDQCIGQLMKLPKSYRYIVNCLI 210
T FV DEV I K+ I + Y V+QW+ +V+Q + QL KL K ++YIV C+I
Sbjct: 10 TAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVI 69
Query: 211 TQDNQTGLHSASLCYWDETNDGCCTIKYTNNDIMCLLYIYGIS 339
Q N GLH+AS C+WD + DG CT+++ N + C++ +G+S
Sbjct: 70 MQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLS 112
>sp|Q9Z336|DYLX_RAT Cytoplasmic dynein light chain (T-complex testis-specific protein 1
homolog)
Length = 113
Score = 100 bits (249), Expect = 1e-21
Identities = 43/103 (41%), Positives = 64/103 (62%)
Frame = +1
Query: 31 TVFVPDEVIEIAKKCISDTLNTATYNRLFVSQWSAVIVDQCIGQLMKLPKSYRYIVNCLI 210
T FV DEV I K+ I + Y V+QW+ +V+Q + QL KL K ++YIV C+I
Sbjct: 10 TAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVI 69
Query: 211 TQDNQTGLHSASLCYWDETNDGCCTIKYTNNDIMCLLYIYGIS 339
Q N GLH+AS C+WD + DG CT+++ N + C++ +G+S
Sbjct: 70 MQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLS 112
>sp|P51807|DYLX_MOUSE Cytoplasmic dynein light chain (T-complex testis-specific protein
1) (TCTEX-1)
Length = 113
Score = 99.4 bits (246), Expect = 3e-21
Identities = 42/103 (40%), Positives = 64/103 (62%)
Frame = +1
Query: 31 TVFVPDEVIEIAKKCISDTLNTATYNRLFVSQWSAVIVDQCIGQLMKLPKSYRYIVNCLI 210
T FV DEV I K+ I + Y V+QW+ +++Q + QL KL + ++YIV C+I
Sbjct: 10 TAFVVDEVSSIVKEAIESAIGGNAYQHSKVNQWTTNVLEQTLSQLTKLGRPFKYIVTCVI 69
Query: 211 TQDNQTGLHSASLCYWDETNDGCCTIKYTNNDIMCLLYIYGIS 339
Q N GLHSAS C+WD + DG CT+++ N + C++ +G+S
Sbjct: 70 MQKNGAGLHSASSCFWDSSTDGSCTVRWENKTMYCIVSTFGLS 112
>sp|Q8SPS9|TCT1L_CANFA T-complex associated-testis-expressed 1-like
Length = 116
Score = 97.8 bits (242), Expect = 8e-21
Identities = 41/101 (40%), Positives = 65/101 (64%)
Frame = +1
Query: 37 FVPDEVIEIAKKCISDTLNTATYNRLFVSQWSAVIVDQCIGQLMKLPKSYRYIVNCLITQ 216
F DE I K+CI L YN+ ++QW+A IV+Q + L+KL K+Y+YIV C + Q
Sbjct: 13 FNADEAHNIVKECIDGVLGGEDYNQNNINQWTASIVEQSLTHLVKLGKAYKYIVTCAVVQ 72
Query: 217 DNQTGLHSASLCYWDETNDGCCTIKYTNNDIMCLLYIYGIS 339
+ G H+AS C+WD T+DG CT+++ N + C++ ++ I+
Sbjct: 73 RSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIA 113
>sp|P56387|TCT1L_MOUSE T-complex associated-testis-expressed 1-like (Protein 91/23)
Length = 116
Score = 97.4 bits (241), Expect = 1e-20
Identities = 41/101 (40%), Positives = 64/101 (63%)
Frame = +1
Query: 37 FVPDEVIEIAKKCISDTLNTATYNRLFVSQWSAVIVDQCIGQLMKLPKSYRYIVNCLITQ 216
F DE I K+C+ L YN ++QW+A IV+Q I L+KL K+Y+YIV C + Q
Sbjct: 13 FNADEAHNIVKECVDGVLGGNDYNENNINQWTASIVEQSITHLVKLGKAYKYIVTCAVVQ 72
Query: 217 DNQTGLHSASLCYWDETNDGCCTIKYTNNDIMCLLYIYGIS 339
+ G H+AS C+WD T+DG CTI++ N + C++ ++ ++
Sbjct: 73 RSPYGFHTASSCFWDTTSDGTCTIRWENRTMNCIVNVFAVA 113
>sp|P51808|TCT1L_HUMAN T-complex associated-testis-expressed 1-like (Protein 91/23)
Length = 116
Score = 95.9 bits (237), Expect = 3e-20
Identities = 39/101 (38%), Positives = 64/101 (63%)
Frame = +1
Query: 37 FVPDEVIEIAKKCISDTLNTATYNRLFVSQWSAVIVDQCIGQLMKLPKSYRYIVNCLITQ 216
F +E I K+C+ L YN ++QW+A IV+Q + L+KL K+Y+YIV C + Q
Sbjct: 13 FNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGKAYKYIVTCAVVQ 72
Query: 217 DNQTGLHSASLCYWDETNDGCCTIKYTNNDIMCLLYIYGIS 339
+ G H+AS C+WD T+DG CT+++ N + C++ ++ I+
Sbjct: 73 KSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIA 113
>sp|Q94524|DYLX_DROME Cytoplasmic dynein light chain (TCTEX-1 protein homolog)
Length = 111
Score = 88.2 bits (217), Expect = 7e-18
Identities = 36/101 (35%), Positives = 60/101 (59%)
Frame = +1
Query: 37 FVPDEVIEIAKKCISDTLNTATYNRLFVSQWSAVIVDQCIGQLMKLPKSYRYIVNCLITQ 216
F+ D+V + K+ I T+ Y V+ W+ +V+ C+ L K K Y+YIV +I Q
Sbjct: 10 FIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQ 69
Query: 217 DNQTGLHSASLCYWDETNDGCCTIKYTNNDIMCLLYIYGIS 339
N GLH+AS CYW+ DG CT+++ N + C++ ++G++
Sbjct: 70 KNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLA 110
>sp|Q9UTS6|DYLX_SCHPO Cytoplasmic dynein light chain (TCTEX-1 protein homolog)
Length = 111
Score = 35.4 bits (80), Expect = 0.051
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +1
Query: 58 EIAKKCISDTLNTATYNRLFVSQWSAVIVDQCIGQLMKLPKSYRYIVNCLITQD-----N 222
EI + L + Y+ ++ + ++ + L K +SY++IV+ + Q
Sbjct: 12 EICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKETQSYKWIVSSTLVQKLPEDHP 71
Query: 223 QTGLHSASLCYWDETNDGCCTIKYTNNDIMCLLYIYGIS 339
G+H+A W+ DG TIK + I +L I IS
Sbjct: 72 SRGVHAAHAACWNCEKDGMTTIKESGEAIDVVLSIMWIS 110
>sp|Q9PQV5|RPOC_UREPA DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
(Transcriptase beta' chain) (RNA polymerase beta'
subunit)
Length = 1305
Score = 30.8 bits (68), Expect = 1.2
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 190 SDKILVTSSIARCIDQR-LQLTIVRRIIDCKSLYLMCQKC 74
SDK L+TS IA I ++ VR + C SLY +CQKC
Sbjct: 969 SDK-LITSEIANIIQNSGIREVEVRSPLHCASLYGVCQKC 1007
>sp|Q9X1Q6|YF70_THEMA Hypothetical protein TM1570
Length = 192
Score = 30.8 bits (68), Expect = 1.2
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 40 VPDEVIEIAKKCISDTLNTATYNRLFVSQWSAVIVDQCIGQ 162
+PDE++EI+ + + +N L V +A+I+D+ IG+
Sbjct: 146 LPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIGE 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,536,485
Number of Sequences: 369166
Number of extensions: 937406
Number of successful extensions: 1792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)