Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_G14
(532 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9YHY6|XCAPD_XENLA Condensin complex subunit 1 (Chromoso... 137 1e-32
sp|Q15021|CND1_HUMAN Condensin subunit 1 (Chromosome conden... 122 4e-28
sp|Q8K2Z4|CND1_MOUSE Condensin complex subunit 1 (Chromosom... 116 3e-26
sp|Q06156|CND1_YEAST Condensin complex subunit 1 (XCAP-D2 h... 87 2e-17
sp|O94679|CND1_SCHPO Condensin complex subunit 1 (p128) (XC... 74 3e-13
sp|Q895I8|FTSK_CLOTE DNA translocase ftsK 38 0.013
sp|Q6ZQK0|K0056_MOUSE Protein KIAA0056 33 0.43
sp|Q04632|COG8_YEAST Conserved oligomeric Golgi complex com... 33 0.43
sp|P12844|MYO3_CAEEL Myosin-3 (Myosin heavy chain A) (MHC A) 32 0.73
sp|P43124|NSE4_YEAST Non-structural maintenance of chromoso... 32 0.73
>sp|Q9YHY6|XCAPD_XENLA Condensin complex subunit 1 (Chromosome-associated protein D2)
(Chromosome assembly protein XCAP-D2) (Chromosome
condensation-related SMC-associated protein 1) (Eg7)
Length = 1364
Score = 137 bits (346), Expect = 1e-32
Identities = 74/176 (42%), Positives = 111/176 (63%)
Frame = +3
Query: 3 ALKQFIHFDGSILAELKRRNAIIEEKDQIKKTKKLAKDRRRQTASNDKDATQNLEEEMGL 182
AL+Q +H + ++ AEL+RR + EE++ +K+ K R+ K +EEE+GL
Sbjct: 910 ALQQVVHLERAVSAELRRRRVLKEEQE----AEKVGKQRK------SKANESTMEEELGL 959
Query: 183 VGATADDAEAEFIRKLCENELITNPSKLLNRLLNLVVHICSNASRFKDKDLQKIATLSLG 362
VGA+ADD EAE IRK+C+ EL+ + L+ L L++ IC+N R+ D DL +ATL+L
Sbjct: 960 VGASADDIEAELIRKICDTELLGG-QQYLSAFLPLILRICNNPGRYSDPDLCTVATLALA 1018
Query: 363 KMMLISSKVCMDNIDLLFNSAVRSPSEIIRGNLIVPLGDLIKRFTTKLEPYTPSLY 530
K M+ISS C ++ LLF +SP +R N+++ LGDL RF +EP+TP+LY
Sbjct: 1019 KYMMISSDFCDTHLRLLFTLLEKSPLPSVRSNIMIALGDLSIRFPNLIEPWTPNLY 1074
>sp|Q15021|CND1_HUMAN Condensin subunit 1 (Chromosome condensation-related SMC-associated
protein 1) (Chromosome-associated protein D2) (hCAP-D2)
(XCAP-D2 homolog)
Length = 1401
Score = 122 bits (307), Expect = 4e-28
Identities = 70/176 (39%), Positives = 105/176 (59%)
Frame = +3
Query: 3 ALKQFIHFDGSILAELKRRNAIIEEKDQIKKTKKLAKDRRRQTASNDKDATQNLEEEMGL 182
AL+Q +H + ++ EL RR + EE++ KTK D + + S++ +EEE+GL
Sbjct: 934 ALQQLVHLEQAVSGELCRRRVLREEQEH--KTK----DPKEKNTSSET----TMEEELGL 983
Query: 183 VGATADDAEAEFIRKLCENELITNPSKLLNRLLNLVVHICSNASRFKDKDLQKIATLSLG 362
VGATADD EAE IR +CE EL+ + L + L++ +C+N + + DL A+L+LG
Sbjct: 984 VGATADDTEAELIRGICEMELLDG-KQTLAAFVPLLLKVCNNPGLYSNPDLSAAASLALG 1042
Query: 363 KMMLISSKVCMDNIDLLFNSAVRSPSEIIRGNLIVPLGDLIKRFTTKLEPYTPSLY 530
K +IS+ C + LLF +SP I+R NL+V GDL RF ++P+TP LY
Sbjct: 1043 KFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATGDLAIRFPNLVDPWTPHLY 1098
>sp|Q8K2Z4|CND1_MOUSE Condensin complex subunit 1 (Chromosome condensation-related
SMC-associated protein 1) (Chromosome-associated protein
D2) (mCAP-D2) (XCAP-D2 homolog)
Length = 1392
Score = 116 bits (291), Expect = 3e-26
Identities = 67/177 (37%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 ALKQFIHFDGSILAELKRRNAIIEEKDQIKKTKKLAKDRRRQTASNDKDATQNLEEEMGL 182
AL+Q +H + ++ EL RR + EE++ AK+ + +TAS++ +EEE+GL
Sbjct: 923 ALQQLVHLEQAVSGELGRRRVLREEQEH------RAKEPKEKTASSET----TMEEELGL 972
Query: 183 VG-ATADDAEAEFIRKLCENELITNPSKLLNRLLNLVVHICSNASRFKDKDLQKIATLSL 359
VG ATADD EAE IR +CE EL+ +++L + L++ +C+N + + +L A+L+L
Sbjct: 973 VGGATADDTEAELIRSICEKELLDG-NQVLAAFVPLLLKVCNNPGLYSNPELCAAASLAL 1031
Query: 360 GKMMLISSKVCMDNIDLLFNSAVRSPSEIIRGNLIVPLGDLIKRFTTKLEPYTPSLY 530
GK +IS+ C + LLF +S +R NL+V GDL RF ++P+TP LY
Sbjct: 1032 GKFCMISAPFCDSQLRLLFTMLEKSSLPTVRSNLMVATGDLAIRFPNLVDPWTPHLY 1088
>sp|Q06156|CND1_YEAST Condensin complex subunit 1 (XCAP-D2 homolog)
Length = 1176
Score = 87.4 bits (215), Expect = 2e-17
Identities = 58/176 (32%), Positives = 89/176 (50%)
Frame = +3
Query: 3 ALKQFIHFDGSILAELKRRNAIIEEKDQIKKTKKLAKDRRRQTASNDKDATQNLEEEMGL 182
A+K ++ + AE K+R IE + + K K D T N D +E+ +
Sbjct: 854 AIKTLVYLE-KCEAEFKKRK--IEAETRNGKVKNQGADVTNTTQDNGGD------KELEM 904
Query: 183 VGATADDAEAEFIRKLCENELITNPSKLLNRLLNLVVHICSNASRFKDKDLQKIATLSLG 362
+G T +D + I+ + ENEL+ +L + +V I SN+SRF D LQ+ ATL L
Sbjct: 905 IGGTNEDDFTDAIQFVKENELLFGEKSILGKFCPIVEEIVSNSSRFSDPMLQRTATLCLE 964
Query: 363 KMMLISSKVCMDNIDLLFNSAVRSPSEIIRGNLIVPLGDLIKRFTTKLEPYTPSLY 530
K+M +SSK C ++ LL +SP IR N ++ LGD+ F ++ T LY
Sbjct: 965 KLMCLSSKYCEKSLPLLITVMEKSPDPTIRSNAVLGLGDMAVCFNNLVDENTDYLY 1020
>sp|O94679|CND1_SCHPO Condensin complex subunit 1 (p128) (XCAP-D2 homolog)
Length = 1158
Score = 73.6 bits (179), Expect = 3e-13
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 ALKQFIHFDGSILAELKRRNAIIEEKDQIKKTKKLAKDRRRQTASNDKDATQNLE-EEMG 179
A+KQ ++ + AE KRR A D R N + E E
Sbjct: 845 AIKQLVYIE-YCEAEFKRRKA----------------DAERLAVQNSNNPINGQETSEYD 887
Query: 180 LVGATADDAEAEFIRKLCENELITNPSKLLNRLLNLVVHICSNASRFKDKDLQKIATLSL 359
L+ T++D +E + + E EL+ + LL+R LVV +CSN ++ L A+L+L
Sbjct: 888 LITGTSEDDFSEAMTFIRERELLYGENSLLSRFAPLVVELCSNHKSHNNQSLLLAASLTL 947
Query: 360 GKMMLISSKVCMDNIDLLFNSAVRSPSEIIRGNLIVPLGDLIKRFTTKLEPYTPSLY 530
K M +S+ CM+++ LL + + IIR NL++ L DL F ++ + LY
Sbjct: 948 SKFMCLSNNFCMEHLPLLITILEKCDNPIIRNNLVIGLADLTVCFNHFIDEISEYLY 1004
>sp|Q895I8|FTSK_CLOTE DNA translocase ftsK
Length = 743
Score = 38.1 bits (87), Expect = 0.013
Identities = 24/76 (31%), Positives = 33/76 (43%)
Frame = +3
Query: 57 RNAIIEEKDQIKKTKKLAKDRRRQTASNDKDATQNLEEEMGLVGATADDAEAEFIRKLCE 236
+N IEE D K+ K + K + +KD + LEEEM D E I L +
Sbjct: 225 KNTNIEENDDTKENKPIQKGKDSNNIQGEKDINKELEEEMSKAALKTIDYEFPSIDLLND 284
Query: 237 NELITNPSKLLNRLLN 284
N+ I + LLN
Sbjct: 285 NKSIKLKKEDKKELLN 300
>sp|Q6ZQK0|K0056_MOUSE Protein KIAA0056
Length = 1506
Score = 33.1 bits (74), Expect = 0.43
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 345 ATLSLGKMMLISSKVCMDNIDLLFNSAVRSPSEIIRGNLIVPLGDLIKRFTTKLEPYTPS 524
A ++LGK+ L + +I L S +R N+I+ + DL R+T ++ Y P+
Sbjct: 918 AIITLGKLCLQHEDLAKKSIPALVRELEVSEDVAVRNNVIIVICDLCIRYTVMVDNYIPN 977
Query: 525 L 527
+
Sbjct: 978 I 978
>sp|Q04632|COG8_YEAST Conserved oligomeric Golgi complex component 8
Length = 607
Score = 33.1 bits (74), Expect = 0.43
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Frame = +3
Query: 69 IEEKDQIKKTKKLAKDRRRQTASNDKDATQN------LEEEMGLVGATADDAEAEFIRKL 230
IEEK+ K+TKK ++ A+N++D T+N EE G V D AE + ++
Sbjct: 380 IEEKE--KETKKEEYQKQDSVANNEEDVTENKSIEDVQEEVQGKVEGEDDGAERKTENEI 437
Query: 231 CENELITNPSKLLNRLLNLVVHICSNASRFKDKDLQKI 344
ENE + + V+ N + +++++ K+
Sbjct: 438 -ENETVNKTEDKAEKEKEEEVNTKDNKAEKEEEEINKV 474
>sp|P12844|MYO3_CAEEL Myosin-3 (Myosin heavy chain A) (MHC A)
Length = 1969
Score = 32.3 bits (72), Expect = 0.73
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 36 ILAELKRRNAIIEEKDQIKKTKKLAKDRRRQTASND-KDATQNLEEEMGLVGATADDAEA 212
++ EL RNA +EE+ + ++ + DR R A + ++ T+ LE++ GATA EA
Sbjct: 1120 LIKELTARNAELEEELEAERNSRQKSDRSRSEAERELEELTERLEQQ---GGATAAQLEA 1176
>sp|P43124|NSE4_YEAST Non-structural maintenance of chromosome element 4 (Non-SMC element
4) (Protein QRI2)
Length = 402
Score = 32.3 bits (72), Expect = 0.73
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 33 SILAELKRRNAIIEEKDQIKKTKKLAKDRRRQTASNDKDATQNLE 167
S + KRRN+ + E D +T+K K R + +S+ KD LE
Sbjct: 3 STVISRKRRNSTVTEPDSSGETRKQKKSRSDEKSSSSKDGDPQLE 47
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,376,413
Number of Sequences: 369166
Number of extensions: 935825
Number of successful extensions: 2854
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2842
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)