Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_G05
(641 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubi... 175 1e-43
sp|P46595|UBC4_SCHPO Ubiquitin-conjugating enzyme E2 4 (Ubi... 171 1e-42
sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubi... 171 2e-42
sp|P15732|UBC5_YEAST Ubiquitin-conjugating enzyme E2-16 kDa... 170 3e-42
sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (U... 169 7e-42
sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubi... 169 7e-42
sp|O74196|UBC1_COLGL Ubiquitin-conjugating enzyme E2-16 kDa... 168 1e-41
sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubi... 168 1e-41
sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kD... 168 1e-41
sp|Q9UVR2|UBC1_MAGGR Ubiquitin-conjugating enzyme E2-16 kDa... 166 6e-41
>sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubiquitin-protein ligase D4)
(Ubiquitin carrier protein D4) (Ubiquitin-conjugating
enzyme E2-17 kDa 4) (E2(17)KB 4)
Length = 147
Score = 175 bits (443), Expect = 1e-43
Identities = 79/126 (62%), Positives = 98/126 (77%)
Frame = +3
Query: 3 TAGPINESNMYKWRATLMGPVGSPYEGGIFFLDIVFPEKYPFIPPAINFITRIYHPNINT 182
+AGP+ E +M+ W+AT+MGP SPY+GG FFL I FP +YPF PP + F TRIYHPN+N+
Sbjct: 22 SAGPVGE-DMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNS 80
Query: 183 TGSICLNILNKEWSPALTLSKVLLCISALLVDPNPDDPYSPAIAQLFKEDKKSFERKAAE 362
GSICL+IL +WSPALT+SKVLL IS+LL DPNPDDP P IAQ++K D+ + R A E
Sbjct: 81 NGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140
Query: 363 WTYKYA 380
WT KYA
Sbjct: 141 WTQKYA 146
>sp|P46595|UBC4_SCHPO Ubiquitin-conjugating enzyme E2 4 (Ubiquitin-protein ligase 4)
(Ubiquitin carrier protein 4)
Length = 147
Score = 171 bits (434), Expect = 1e-42
Identities = 77/126 (61%), Positives = 96/126 (76%)
Frame = +3
Query: 3 TAGPINESNMYKWRATLMGPVGSPYEGGIFFLDIVFPEKYPFIPPAINFITRIYHPNINT 182
+AGP+ + +++ W+AT+MGP SPY GG+FFL I FP YPF PP +NF TRIYHPNIN+
Sbjct: 22 SAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINS 80
Query: 183 TGSICLNILNKEWSPALTLSKVLLCISALLVDPNPDDPYSPAIAQLFKEDKKSFERKAAE 362
GSICL+IL +WSPALT+SKVLL I +LL DPNPDDP P IA ++K D+ +E A E
Sbjct: 81 NGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSARE 140
Query: 363 WTYKYA 380
WT KYA
Sbjct: 141 WTRKYA 146
>sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62838|UB2D2_MOUSE Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62837|UB2D2_HUMAN Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62840|UB5B_XENLA Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Xubc4)
Length = 147
Score = 171 bits (432), Expect = 2e-42
Identities = 77/126 (61%), Positives = 98/126 (77%)
Frame = +3
Query: 3 TAGPINESNMYKWRATLMGPVGSPYEGGIFFLDIVFPEKYPFIPPAINFITRIYHPNINT 182
+AGP+ + +M+ W+AT+MGP SPY+GG+FFL I FP YPF PP + F TRIYHPNIN+
Sbjct: 22 SAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
Query: 183 TGSICLNILNKEWSPALTLSKVLLCISALLVDPNPDDPYSPAIAQLFKEDKKSFERKAAE 362
GSICL+IL +WSPALT+SKVLL I +LL DPNPDDP P IA+++K D++ + R A E
Sbjct: 81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
Query: 363 WTYKYA 380
WT KYA
Sbjct: 141 WTQKYA 146
>sp|P15732|UBC5_YEAST Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 148
Score = 170 bits (430), Expect = 3e-42
Identities = 77/126 (61%), Positives = 97/126 (76%)
Frame = +3
Query: 3 TAGPINESNMYKWRATLMGPVGSPYEGGIFFLDIVFPEKYPFIPPAINFITRIYHPNINT 182
+AGP+ + ++Y W+A++MGP SPY GG+FFL I FP YPF PP +NF T+IYHPNIN+
Sbjct: 23 SAGPVGD-DLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINS 81
Query: 183 TGSICLNILNKEWSPALTLSKVLLCISALLVDPNPDDPYSPAIAQLFKEDKKSFERKAAE 362
+G+ICL+IL +WSPALTLSKVLL I +LL D NPDDP P IAQ++K DK +E A E
Sbjct: 82 SGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKE 141
Query: 363 WTYKYA 380
WT KYA
Sbjct: 142 WTKKYA 147
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (Ubiquitin-conjugating
enzyme E2-17 kDa 1) (E2(17)KB 1)
sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (UbcH5)
(Ubiquitin-conjugating enzyme E2-17 kDa 1) (E2(17)KB 1)
Length = 147
Score = 169 bits (427), Expect = 7e-42
Identities = 76/126 (60%), Positives = 97/126 (76%)
Frame = +3
Query: 3 TAGPINESNMYKWRATLMGPVGSPYEGGIFFLDIVFPEKYPFIPPAINFITRIYHPNINT 182
+AGP+ + +++ W+AT+MGP S Y+GG+FFL + FP YPF PP I F T+IYHPNIN+
Sbjct: 22 SAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS 80
Query: 183 TGSICLNILNKEWSPALTLSKVLLCISALLVDPNPDDPYSPAIAQLFKEDKKSFERKAAE 362
GSICL+IL +WSPALT+SKVLL I +LL DPNPDDP P IAQ++K DK+ + R A E
Sbjct: 81 NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
Query: 363 WTYKYA 380
WT KYA
Sbjct: 141 WTQKYA 146
>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3) (Phosphoarginine
phosphatase) (PAPase)
sp|P61079|UB2D3_MOUSE Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
sp|P61077|UB2D3_HUMAN Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
Length = 147
Score = 169 bits (427), Expect = 7e-42
Identities = 76/126 (60%), Positives = 97/126 (76%)
Frame = +3
Query: 3 TAGPINESNMYKWRATLMGPVGSPYEGGIFFLDIVFPEKYPFIPPAINFITRIYHPNINT 182
+AGP+ + +M+ W+AT+MGP SPY+GG+FFL I FP YPF PP + F TRIYHPNIN+
Sbjct: 22 SAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
Query: 183 TGSICLNILNKEWSPALTLSKVLLCISALLVDPNPDDPYSPAIAQLFKEDKKSFERKAAE 362
GSICL+IL +WSPALT+SKVLL I +LL DPNPDDP P IA+++K D+ + R + E
Sbjct: 81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
Query: 363 WTYKYA 380
WT KYA
Sbjct: 141 WTQKYA 146
>sp|O74196|UBC1_COLGL Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Colletotrichum
hard-surface-induced protein 1)
Length = 147
Score = 168 bits (426), Expect = 1e-41
Identities = 76/126 (60%), Positives = 96/126 (76%)
Frame = +3
Query: 3 TAGPINESNMYKWRATLMGPVGSPYEGGIFFLDIVFPEKYPFIPPAINFITRIYHPNINT 182
+AGP+ E +++ W+AT+MGP SPY GG+FFL I FP YPF PP +NF TRIYHPNIN+
Sbjct: 22 SAGPVGE-DLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINS 80
Query: 183 TGSICLNILNKEWSPALTLSKVLLCISALLVDPNPDDPYSPAIAQLFKEDKKSFERKAAE 362
GSICL+IL +WSPALT+SKVLL I ++L DPNPD+P P IA ++K D+ +E A E
Sbjct: 81 NGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATARE 140
Query: 363 WTYKYA 380
WT KYA
Sbjct: 141 WTRKYA 146
>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubiquitin-protein ligase 2)
(Ubiquitin carrier protein 2)
Length = 147
Score = 168 bits (425), Expect = 1e-41
Identities = 75/126 (59%), Positives = 98/126 (77%)
Frame = +3
Query: 3 TAGPINESNMYKWRATLMGPVGSPYEGGIFFLDIVFPEKYPFIPPAINFITRIYHPNINT 182
+AGP+ + +++ W+AT+MGP SPY+GG+FFL I FP YPF PP + F TRIYHPNIN+
Sbjct: 22 SAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
Query: 183 TGSICLNILNKEWSPALTLSKVLLCISALLVDPNPDDPYSPAIAQLFKEDKKSFERKAAE 362
GSICL+IL +WSPALT+SKVLL I +LL DPNPDDP P IA+++K D++ + + A E
Sbjct: 81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 140
Query: 363 WTYKYA 380
WT KYA
Sbjct: 141 WTQKYA 146
>sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Effete protein)
Length = 147
Score = 168 bits (425), Expect = 1e-41
Identities = 75/126 (59%), Positives = 97/126 (76%)
Frame = +3
Query: 3 TAGPINESNMYKWRATLMGPVGSPYEGGIFFLDIVFPEKYPFIPPAINFITRIYHPNINT 182
+AGP+ + +++ W+AT+MGP SPY+GG+FFL I FP YPF PP + F TRIYHPNIN+
Sbjct: 22 SAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
Query: 183 TGSICLNILNKEWSPALTLSKVLLCISALLVDPNPDDPYSPAIAQLFKEDKKSFERKAAE 362
GSICL+IL +WSPALT+SKVLL I +LL DPNPDDP P IA+++K D++ + A E
Sbjct: 81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 140
Query: 363 WTYKYA 380
WT KYA
Sbjct: 141 WTRKYA 146
>sp|Q9UVR2|UBC1_MAGGR Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 147
Score = 166 bits (419), Expect = 6e-41
Identities = 75/126 (59%), Positives = 95/126 (75%)
Frame = +3
Query: 3 TAGPINESNMYKWRATLMGPVGSPYEGGIFFLDIVFPEKYPFIPPAINFITRIYHPNINT 182
+AGP+ E +++ W+AT+MGP SPY GG+FFL I FP YPF PP +NF TRIYHPNIN+
Sbjct: 22 SAGPVGE-DLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINS 80
Query: 183 TGSICLNILNKEWSPALTLSKVLLCISALLVDPNPDDPYSPAIAQLFKEDKKSFERKAAE 362
GSICL+IL +WSPALT+SKVLL I ++L DPNPDDP P IA +++ + +E A E
Sbjct: 81 NGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYRTARAQYEATARE 140
Query: 363 WTYKYA 380
WT KYA
Sbjct: 141 WTPKYA 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,241,652
Number of Sequences: 369166
Number of extensions: 1149826
Number of successful extensions: 3182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3130
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)