Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_F21
(408 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36304|POLR_KYMVJ RNA replicase polyprotein 32 0.50
sp|O43918|AIRE_HUMAN Autoimmune regulator (Autoimmune polye... 32 0.50
sp|P13055|E75BB_DROME Ecdysone-induced protein 75B isoform ... 30 2.5
sp|P33424|POLN_HEVPA Non-structural polyprotein (RNA-direct... 30 2.5
sp|P78871|RST2_SCHPO Zinc finger protein rst2 29 3.2
sp|Q980V3|SYD_SULSO Aspartyl-tRNA synthetase (Aspartate--tR... 29 3.2
sp|O75426|FBX24_HUMAN F-box only protein 24 29 4.2
sp|Q66L44|DOS_MOUSE Protein Dos (Downstream of Stk11 protein) 29 4.2
sp|Q6BQ20|ATG13_DEBHA Autophagy-related protein 13 29 4.2
sp|O13853|ITS3_SCHPO Phosphatidylinositol-4-phosphate 5-kin... 28 5.5
>sp|P36304|POLR_KYMVJ RNA replicase polyprotein
Length = 1874
Score = 32.0 bits (71), Expect = 0.50
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +3
Query: 30 NSPFIKRSAVNSSAIPPPQLPPTGRTNQKNLATFLQNPSAAASVEARLLNNP------IS 191
+SPF+ +N SA+PPPQ PT T + L P V++ L+ +P +S
Sbjct: 722 HSPFLSDGQLNYSALPPPQ-DPTNTT-----LSLLPEPKPPTEVQSPLMADPTCVGPAVS 775
Query: 192 QNFSQPDQMMTSTAS 236
+ P +TAS
Sbjct: 776 FSSLYPRDFFPNTAS 790
>sp|O43918|AIRE_HUMAN Autoimmune regulator (Autoimmune polyendocrinopathy candidiasis
ectodermal dystrophy protein) (APECED protein)
Length = 545
Score = 32.0 bits (71), Expect = 0.50
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 45 KRSAVNSSAIPPPQLPPTGRTNQKNLATFLQNPSAAASVEARLLNNPISQNFSQPDQMMT 224
K AV + +PPP+LP + +++ A +A A++ R +P SQ ++P +
Sbjct: 114 KPPAVPKALVPPPRLPTKRKASEEARA------AAPAALTPRGTASPGSQLKAKPPKKPE 167
Query: 225 STASQIRVQINN 260
S+A Q R+ + N
Sbjct: 168 SSAEQQRLPLGN 179
>sp|P13055|E75BB_DROME Ecdysone-induced protein 75B isoform B (E75-C)
Length = 1412
Score = 29.6 bits (65), Expect = 2.5
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 75 PPPQLPPTGRTNQKNLATFLQNPSAAA-----SVEARLLNNPISQNFSQPDQ 215
PPP PP + Q+ ++T + P+AAA S R +N S +F Q Q
Sbjct: 276 PPPPPPPPQQQQQQYISTGVPPPTAAARKFVVSTSTRHVNVIASNHFQQQQQ 327
>sp|P33424|POLN_HEVPA Non-structural polyprotein (RNA-directed RNA polymerase/Helicase)
Length = 1693
Score = 29.6 bits (65), Expect = 2.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 6 KSLFPFCYNSPFIKRSAVNSSAIPPPQLPPTGRTNQKNLATFLQNPSAAA 155
+S PFC S R+ A+P P P G T++ ++ + P+ AA
Sbjct: 689 ESANPFCGESTLYTRTWSEVDAVPSPAQPDLGFTSEPSIPSRAATPTPAA 738
>sp|P78871|RST2_SCHPO Zinc finger protein rst2
Length = 567
Score = 29.3 bits (64), Expect = 3.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 42 IKRSAVNSSAIPPPQLPPTGRTNQKNLATFLQNPSAAASVEARLLNN 182
+ S +N A+P P P K+ + F QNP + SV+ L+N
Sbjct: 342 VSASFLNLQAMPSPHASPKDSLINKSNSYFFQNPPKSNSVDYTRLDN 388
>sp|Q980V3|SYD_SULSO Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 429
Score = 29.3 bits (64), Expect = 3.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -1
Query: 198 NSEKSD--YSTIWPPLRR----RQRDSGEKLLNSFDLFFQWAAAVEEELQNCLQQ 52
N K D + T WP L R +Q+ +L SFDL F+W V +N +++
Sbjct: 310 NELKEDLYFVTDWPWLSRPFYTKQKKDNPQLSESFDLIFRWLEIVSGSSRNHVKE 364
>sp|O75426|FBX24_HUMAN F-box only protein 24
Length = 580
Score = 28.9 bits (63), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 95 GRQLWRRNCRTVYSRTLDKGRIVTKWKQ 12
G +WRR CR + R D+G V WK+
Sbjct: 75 GEGVWRRICRRLSPRLQDQGSGVRPWKR 102
>sp|Q66L44|DOS_MOUSE Protein Dos (Downstream of Stk11 protein)
Length = 552
Score = 28.9 bits (63), Expect = 4.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 75 PPPQLPPTGRTNQKNLATFLQNPSAAASVEARLLNNPISQ 194
PPP+ PP R LQ S AS+E R + +S+
Sbjct: 328 PPPESPPALRPKDGEARRLLQMDSGYASIEGRGAGDEVSE 367
>sp|Q6BQ20|ATG13_DEBHA Autophagy-related protein 13
Length = 837
Score = 28.9 bits (63), Expect = 4.2
Identities = 22/81 (27%), Positives = 33/81 (40%)
Frame = +3
Query: 18 PFCYNSPFIKRSAVNSSAIPPPQLPPTGRTNQKNLATFLQNPSAAASVEARLLNNPISQN 197
P P I V S + PP G ++ + + N SA+ + A +L NP S
Sbjct: 393 PIVSQRPTINPFKVGSISTSPPATTNFGGSSLERKVSITSNKSASNASLAAMLRNPRSST 452
Query: 198 FSQPDQMMTSTASQIRVQINN 260
S T+T + I + NN
Sbjct: 453 SS------TNTTANIPIANNN 467
>sp|O13853|ITS3_SCHPO Phosphatidylinositol-4-phosphate 5-kinase its3
(1-phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) (Diphosphoinositide kinase)
Length = 742
Score = 28.5 bits (62), Expect = 5.5
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 42 IKRSAVNSSAIPPPQLPPTGRTNQKNLATFLQNPSAAASVEARLLNNPISQNFSQPDQMM 221
I R + SA+ PP + +NL L +P + + R +NP++ + P+
Sbjct: 116 ILRDSPIVSALEPPSSNSSSSPQLQNLKHQLSSPQPSRAPIDRSSSNPVTSSQQPPNDRS 175
Query: 222 TSTASQ 239
T ++SQ
Sbjct: 176 TLSSSQ 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,440,304
Number of Sequences: 369166
Number of extensions: 712790
Number of successful extensions: 2411
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2407
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)