Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_F12
(411 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1 a... 28 5.5
sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1 a... 28 5.5
sp|P20792|DAF1_CAEEL Cell-surface receptor daf-1 precursor ... 28 5.5
sp|P34576|MUA3_CAEEL Transmembrane cell adhesion receptor m... 28 7.1
>sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
LMX1A) (LMX-1) (LIM-homeobox protein 1)
Length = 382
Score = 28.5 bits (62), Expect = 5.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +3
Query: 87 SIQKGCSWLISIDFSSKCNQNFFFEMCFLSKLC----YLTCFKFD-ELSC*YNKFE*YFT 251
S+ +GC +IS F + N +F+ E C C TCF D +L C Y+ +E F
Sbjct: 33 SVCEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYH-YEKLFA 91
Query: 252 IR 257
++
Sbjct: 92 VK 93
>sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1)
Length = 382
Score = 28.5 bits (62), Expect = 5.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +3
Query: 87 SIQKGCSWLISIDFSSKCNQNFFFEMCFLSKLC----YLTCFKFD-ELSC*YNKFE*YFT 251
S+ +GC +IS F + N +F+ E C C TCF D +L C Y+ +E F
Sbjct: 33 SVCEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYH-YEKLFA 91
Query: 252 IR 257
++
Sbjct: 92 VK 93
>sp|P20792|DAF1_CAEEL Cell-surface receptor daf-1 precursor (Abnormal dauer formation
protein 1)
Length = 669
Score = 28.5 bits (62), Expect = 5.5
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 81 HSSIQKGCS-----WLISIDFSSKCNQNFFFEMCFLSKLCYLTCFKFDELS 218
H S + GC+ W+ I+F ++ +++F+ C+ CY + E+S
Sbjct: 57 HCSREVGCNARTTGWVPGIEFLNETDRSFYENTCYTDGSCYQSARPSPEIS 107
>sp|P34576|MUA3_CAEEL Transmembrane cell adhesion receptor mua-3 precursor
Length = 3767
Score = 28.1 bits (61), Expect = 7.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +1
Query: 274 CASIMNDWTVPRLEQICD*SYCQLTVENYNLALK--LQQLNKF--PGKFC 411
C ++N+ T PRL Q ++C T+E Y+ K +++F PG+ C
Sbjct: 1705 CKELVNECTNPRLNQCDRNAHCIDTIEGYSCICKPGFVDMDEFGNPGRRC 1754
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,122,886
Number of Sequences: 369166
Number of extensions: 497950
Number of successful extensions: 991
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)