Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_F10
(431 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13283|G3BP_HUMAN Ras-GTPase-activating protein binding ... 57 1e-08
sp|P97855|G3BP_MOUSE Ras-GTPase-activating protein binding ... 57 2e-08
sp|P97379|G3B2_MOUSE Ras-GTPase-activating protein binding ... 48 1e-05
sp|Q9UN86|G3B2_HUMAN Ras-GTPase-activating protein binding ... 48 1e-05
sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotei... 36 0.040
sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in ... 34 0.15
sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in ... 34 0.15
sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 (Deleted in ... 34 0.15
sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2... 33 0.20
sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2... 33 0.20
>sp|Q13283|G3BP_HUMAN Ras-GTPase-activating protein binding protein 1 (GAP SH3-domain
binding protein 1) (G3BP-1) (DNA helicase VIII)
(HDH-VIII)
Length = 466
Score = 57.4 bits (137), Expect = 1e-08
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 KDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSAH-RLN 196
KDFF + YG V ++RI N G LPNFGF+VF + E V+++L N+PI + RLN
Sbjct: 357 KDFF-QSYGNVVELRI------NSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLN 409
Query: 197 VEQKMGSSRGSHKAGRR*N 253
VE+K +R + + RR N
Sbjct: 410 VEEK--KTRAAREGDRRDN 426
>sp|P97855|G3BP_MOUSE Ras-GTPase-activating protein binding protein 1 (GAP SH3-domain
binding protein 1) (G3BP-1) (DNA helicase VIII)
(HDH-VIII)
Length = 465
Score = 56.6 bits (135), Expect = 2e-08
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 KDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYY-SAHRLN 196
KDFF + +G V ++RI N G LPNFGF+VF + E V+++L N+PI + A RLN
Sbjct: 355 KDFF-QNFGNVVELRI------NSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGAVRLN 407
Query: 197 VEQKMGSSRGSHKAGRR*N 253
VE+K +R + + RR N
Sbjct: 408 VEEK--KTRAAREGDRRDN 424
>sp|P97379|G3B2_MOUSE Ras-GTPase-activating protein binding protein 2 (GAP SH3-domain
binding protein 2) (G3BP-2)
Length = 482
Score = 47.8 bits (112), Expect = 1e-05
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +2
Query: 20 KDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSAH-RLN 196
K+FF +G V ++RI T G LPNFGF+VF + E V+ IL KPI + RLN
Sbjct: 348 KEFFMS-FGNVVELRIN---TKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLN 403
Query: 197 VEQK 208
VE+K
Sbjct: 404 VEEK 407
>sp|Q9UN86|G3B2_HUMAN Ras-GTPase-activating protein binding protein 2 (GAP SH3-domain
binding protein 2) (G3BP-2)
Length = 482
Score = 47.8 bits (112), Expect = 1e-05
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +2
Query: 20 KDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSAH-RLN 196
K+FF +G V ++RI T G LPNFGF+VF + E V+ IL KPI + RLN
Sbjct: 348 KEFFMS-FGNVVELRIN---TKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLN 403
Query: 197 VEQK 208
VE+K
Sbjct: 404 VEEK 407
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 (hnRNP A3(A))
Length = 373
Score = 35.8 bits (81), Expect = 0.040
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = +2
Query: 29 FSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSAHRLNVEQK 208
+SE YG ++ + + + R S + + F F+ F +H+ V++I+ K Y++ + N E K
Sbjct: 137 YSESYGKIETIEVMEDRQSGKKR---GFAFVTFDDHDTVDKIVVQK--YHTINGHNCEVK 191
Query: 209 MGSSR 223
S+
Sbjct: 192 KALSK 196
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 407
Score = 33.9 bits (76), Expect = 0.15
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +2
Query: 20 KDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSAHRLNV 199
+ +FS+ YG V D I K +T+N+ + FGF+ F + V +L ++P ++ N+
Sbjct: 27 RSYFSQ-YGEVVDCVIMKDKTTNQSR---GFGFVKFKDPNCVGTVLASRP--HTLDGRNI 80
Query: 200 EQKMGSSRG 226
+ K + RG
Sbjct: 81 DPKPCTPRG 89
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 406
Score = 33.9 bits (76), Expect = 0.15
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +2
Query: 20 KDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSAHRLNV 199
+ +FS+ YG V D I K +T+N+ + FGF+ F + V +L ++P ++ N+
Sbjct: 27 RSYFSQ-YGEVVDCVIMKDKTTNQSR---GFGFVKFKDPNCVGTVLASRP--HTLDGRNI 80
Query: 200 EQKMGSSRG 226
+ K + RG
Sbjct: 81 DPKPCTPRG 89
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1) (Proline-rich Vg1 mRNA-binding protein)
Length = 360
Score = 33.9 bits (76), Expect = 0.15
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +2
Query: 20 KDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYYSAHRLNV 199
+ +FS+ YG V D I K +T+N+ + FGF+ F + V +L ++P ++ N+
Sbjct: 27 RSYFSQ-YGEVVDCVIMKDKTTNQSR---GFGFVKFKDPNCVGTVLASRP--HTLDGRNI 80
Query: 200 EQKMGSSRG 226
+ K + RG
Sbjct: 81 DPKPCTPRG 89
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 (Musashi-2)
Length = 346
Score = 33.5 bits (75), Expect = 0.20
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +2
Query: 20 KDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEI 154
K +F E++G V+D + +T+N + FGF+ F N +VVE++
Sbjct: 127 KQYF-EQFGKVEDAMLMFDKTTNRHR---GFGFVTFENEDVVEKV 167
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 (Musashi-2)
Length = 328
Score = 33.5 bits (75), Expect = 0.20
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +2
Query: 20 KDFFSEKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEI 154
K +F E++G V+D + +T+N + FGF+ F N +VVE++
Sbjct: 127 KQYF-EQFGKVEDAMLMFDKTTNRHR---GFGFVTFENEDVVEKV 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,927,548
Number of Sequences: 369166
Number of extensions: 921033
Number of successful extensions: 1979
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1978
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)