Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_E21
(849 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 494 e-139
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 493 e-139
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 493 e-139
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 492 e-139
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 491 e-138
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 490 e-138
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 490 e-138
sp|P02550|TBA_PIG Tubulin alpha chain 488 e-138
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 488 e-138
sp|P08537|TBA_XENLA Tubulin alpha chain 488 e-138
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 494 bits (1271), Expect = e-139
Identities = 241/266 (90%), Positives = 248/266 (93%)
Frame = +3
Query: 3 CISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 182
CISVH+GQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP
Sbjct: 4 CISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 63
Query: 183 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 362
RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+DLVLDRIR
Sbjct: 64 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIR 123
Query: 363 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVE 542
KLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVE
Sbjct: 124 KLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVE 183
Query: 543 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 722
PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 723 FDGALNVDLTEFQTNLGSISKNPFPI 800
FDGALNVDLTEFQTNL + FP+
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 757 FKQIWVPYPRIHFPLATYAPVISAEKAYHEQ 849
F+ VPYPRIHFPLATYAPVISAEKAYHEQ
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 493 bits (1268), Expect = e-139
Identities = 240/266 (90%), Positives = 248/266 (93%)
Frame = +3
Query: 3 CISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 182
CIS+HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP
Sbjct: 4 CISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 63
Query: 183 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 362
RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE++D+VLDRIR
Sbjct: 64 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIR 123
Query: 363 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVE 542
KLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVE
Sbjct: 124 KLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVE 183
Query: 543 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 722
PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 723 FDGALNVDLTEFQTNLGSISKNPFPI 800
FDGALNVDLTEFQTNL + FP+
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 757 FKQIWVPYPRIHFPLATYAPVISAEKAYHEQ 849
F+ VPYPRIHFPLATYAPVISAEKAYHEQ
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 493 bits (1268), Expect = e-139
Identities = 241/266 (90%), Positives = 248/266 (93%)
Frame = +3
Query: 3 CISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 182
CIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVP
Sbjct: 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVP 63
Query: 183 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 362
RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR
Sbjct: 64 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 123
Query: 363 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVE 542
KLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVE
Sbjct: 124 KLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVE 183
Query: 543 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 722
PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 723 FDGALNVDLTEFQTNLGSISKNPFPI 800
FDGALNVDLTEFQTNL + FP+
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 57.8 bits (138), Expect = 4e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 757 FKQIWVPYPRIHFPLATYAPVISAEKAYHEQ 849
F+ VPYPRIHFPL TYAPVISAEKAYHEQ
Sbjct: 255 FQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 285
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 492 bits (1267), Expect = e-139
Identities = 240/266 (90%), Positives = 248/266 (93%)
Frame = +3
Query: 3 CISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 182
CIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVP
Sbjct: 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVP 63
Query: 183 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 362
RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR
Sbjct: 64 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 123
Query: 363 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVE 542
KLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVE
Sbjct: 124 KLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVE 183
Query: 543 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 722
PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 723 FDGALNVDLTEFQTNLGSISKNPFPI 800
FDGALNVDLTEFQTNL + FP+
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 57.8 bits (138), Expect = 4e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 757 FKQIWVPYPRIHFPLATYAPVISAEKAYHEQ 849
F+ VPYPRIHFPL TYAPVISAEKAYHEQ
Sbjct: 255 FQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 285
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 491 bits (1264), Expect = e-138
Identities = 239/266 (89%), Positives = 248/266 (93%)
Frame = +3
Query: 3 CISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 182
CIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP
Sbjct: 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 63
Query: 183 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 362
RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR+R
Sbjct: 64 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVR 123
Query: 363 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVE 542
KL+DQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVE
Sbjct: 124 KLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVE 183
Query: 543 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 722
PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 723 FDGALNVDLTEFQTNLGSISKNPFPI 800
FDGALNVDLTEFQTNL + FP+
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 55.8 bits (133), Expect = 1e-07
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +1
Query: 757 FKQIWVPYPRIHFPLATYAPVISAEKAYHE 846
F+ VPYPRIHFPL TYAPVISAEKAYHE
Sbjct: 255 FQTNLVPYPRIHFPLVTYAPVISAEKAYHE 284
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 490 bits (1262), Expect = e-138
Identities = 237/266 (89%), Positives = 248/266 (93%)
Frame = +3
Query: 3 CISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 182
CIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP
Sbjct: 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 63
Query: 183 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 362
RAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIR
Sbjct: 64 RAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIR 123
Query: 363 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVE 542
KLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVE
Sbjct: 124 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 543 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 722
PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 723 FDGALNVDLTEFQTNLGSISKNPFPI 800
FDGALNVDLTEFQTNL + FP+
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 757 FKQIWVPYPRIHFPLATYAPVISAEKAYHEQ 849
F+ VPYPRIHFPLATYAPVISAEKAYHEQ
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 490 bits (1261), Expect = e-138
Identities = 240/266 (90%), Positives = 247/266 (92%)
Frame = +3
Query: 3 CISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 182
CIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP
Sbjct: 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 63
Query: 183 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 362
RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR
Sbjct: 64 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 123
Query: 363 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVE 542
KLAD CTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVE
Sbjct: 124 KLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVE 183
Query: 543 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 722
PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 723 FDGALNVDLTEFQTNLGSISKNPFPI 800
FDGALNVDLTEFQTNL + FP+
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 757 FKQIWVPYPRIHFPLATYAPVISAEKAYHEQ 849
F+ VPYPRIHFPLATYAPVISAEKAYHEQ
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 488 bits (1257), Expect = e-138
Identities = 236/266 (88%), Positives = 247/266 (92%)
Frame = +3
Query: 3 CISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 182
CIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP
Sbjct: 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 63
Query: 183 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 362
RAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIR
Sbjct: 64 RAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIR 123
Query: 363 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVE 542
KLADQCTGLQGF +FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVE
Sbjct: 124 KLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 543 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 722
PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 723 FDGALNVDLTEFQTNLGSISKNPFPI 800
FDGALNVDLTEFQTNL + FP+
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRAHFPL 269
Score = 57.4 bits (137), Expect = 5e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 757 FKQIWVPYPRIHFPLATYAPVISAEKAYHEQ 849
F+ VPYPR HFPLATYAPVISAEKAYHEQ
Sbjct: 255 FQTNLVPYPRAHFPLATYAPVISAEKAYHEQ 285
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 488 bits (1256), Expect = e-138
Identities = 236/266 (88%), Positives = 247/266 (92%)
Frame = +3
Query: 3 CISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 182
CIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP
Sbjct: 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 63
Query: 183 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 362
RAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIR
Sbjct: 64 RAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIR 123
Query: 363 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVE 542
KLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVE
Sbjct: 124 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 543 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 722
PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243
Query: 723 FDGALNVDLTEFQTNLGSISKNPFPI 800
FDGALNVDLTEFQTNL + FP+
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 757 FKQIWVPYPRIHFPLATYAPVISAEKAYHEQ 849
F+ VPYPRIHFPLATYAPVISAEKAYHEQ
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 488 bits (1256), Expect = e-138
Identities = 236/266 (88%), Positives = 247/266 (92%)
Frame = +3
Query: 3 CISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 182
CIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP
Sbjct: 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVP 63
Query: 183 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIR 362
RAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIR
Sbjct: 64 RAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIR 123
Query: 363 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVE 542
KLADQCTGLQGFL+FH LL+ERLSVDYGKKSKLEFA+YPAPQ++TAVVE
Sbjct: 124 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLLERLSVDYGKKSKLEFAIYPAPQVSTAVVE 183
Query: 543 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 722
PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243
Query: 723 FDGALNVDLTEFQTNLGSISKNPFPI 800
FDGALNVDLTEFQTNL + FP+
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 757 FKQIWVPYPRIHFPLATYAPVISAEKAYHEQ 849
F+ VPYPRIHFPLATYAPVISAEKAYHEQ
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,712,101
Number of Sequences: 369166
Number of extensions: 2057719
Number of successful extensions: 6363
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6065
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)