Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_E16
(307 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88799|ZAN_MOUSE Zonadhesin precursor 35 0.054
sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-rela... 35 0.071
sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-rela... 33 0.16
sp|Q8LBL5|PRT1_ARATH Ubiquitin protein ligase PRT1 (Proteol... 33 0.21
sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein ... 33 0.27
sp|P22549|IPDE_DICDI Cyclic nucleotide phosphodiesterase in... 32 0.35
sp|P40798|STC_DROME Shuttle craft protein 32 0.35
sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Lami... 31 0.78
sp|P60214|SC49B_TITCA Toxin Tc49b 30 1.3
sp|P32022|GIL1_ENTHI Galactose-inhibitable lectin 170 kDa s... 30 2.3
>sp|O88799|ZAN_MOUSE Zonadhesin precursor
Length = 5376
Score = 35.0 bits (79), Expect = 0.054
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = +2
Query: 14 GNTTASEPNCDLQSCSKGDFSECRD--CMP-RYCYGANDGCSNYVTKKFNCKVHDCHLKS 184
G T SE +C KG C D C P YC +NDG SN V C H S
Sbjct: 2411 GKTWISEDCTQSCTCMKGSM-RCWDFQCPPGTYCKNSNDGSSNCVKISLQCPAH-----S 2464
Query: 185 GYDACRDCLIPNCPEMPSEIRGQVCSMDKSC 277
+ C P+C + G + +C
Sbjct: 2465 KFTDCLPPCHPSCSDPDGHCEGISTNAHSNC 2495
Score = 28.9 bits (63), Expect = 3.9
Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Frame = +2
Query: 50 QSCS-KGDFSECRDCM---PRYCYGANDGCSNYVTKKFNCKVHDCHLKSGYDACRDCLIP 217
QSCS G +C++ YC DG SN + C H S Y C P
Sbjct: 2781 QSCSCMGGAIQCQNFKCPSEAYCQDMEDGNSNCTSIPLQCPAH-----SHYTNCLPTCQP 2835
Query: 218 NCPEMPSEIRGQVCSMDKSC 277
+C + G +C
Sbjct: 2836 SCSDPDGHCEGSSTKAPSAC 2855
Score = 28.5 bits (62), Expect = 5.1
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Frame = +2
Query: 23 TASEPNCDLQSCSKGDFSECRD--CMP-RYCYGANDGCSNYVTKKFNCKVHDCHLKSGYD 193
T + P C G +C+ C P YC DG SN C H S +
Sbjct: 3490 TWTSPGCTQSCACMGGAVQCQSSQCPPGTYCKDNEDGNSNCAKITLQCPAH-----SLFT 3544
Query: 194 ACRDCLIPNCPEMPSEIRGQVCSMDKSC 277
C +P+C + +G + +C
Sbjct: 3545 NCLPPCLPSCLDPDGLCKGASPKVPSTC 3572
>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B precursor
(Low-density lipoprotein receptor-related protein-deleted
in tumor) (LRP-DIT)
Length = 4599
Score = 34.7 bits (78), Expect = 0.071
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +2
Query: 26 ASEPNCDLQSCSKGDFSECRD--CMPRY--CYGANDGCSNYVTKKFNCKVHDCHLKSGYD 193
+ E NCD ++C +F +C++ C+P + C ND N + + NCK C LK
Sbjct: 3466 SDEANCDKKTCGPHEF-QCKNNNCIPDHWRCDSQNDCSDN--SDEENCKPQTCTLKDFLC 3522
Query: 194 ACRDCL 211
A DC+
Sbjct: 3523 ANGDCV 3528
>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B precursor
(Low-density lipoprotein receptor-related protein-deleted
in tumor) (LRP-DIT)
Length = 4599
Score = 33.5 bits (75), Expect = 0.16
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +2
Query: 26 ASEPNCDLQSCSKGDFSECRD--CMPRY--CYGANDGCSNYVTKKFNCKVHDCHLKSGYD 193
+ E NCD ++C +F +C++ C+P + C ND N + + NCK C LK
Sbjct: 3466 SDEANCDKKTCGPHEF-QCKNNNCIPDHWRCDNQNDCSDN--SDEDNCKPQTCTLKDFLC 3522
Query: 194 ACRDCL 211
+ DC+
Sbjct: 3523 SNGDCV 3528
>sp|Q8LBL5|PRT1_ARATH Ubiquitin protein ligase PRT1 (Proteolysis 1 protein)
Length = 410
Score = 33.1 bits (74), Expect = 0.21
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 107 YGAN-DGCSNY--VTKKFNCKVHDCHLKSGYDACRDCLIPNCPEMPSEIRGQ 253
+GA D C Y + ++ CK DC + GYD C+DC E PS++ G+
Sbjct: 307 FGAGCDSCGVYPIIGDRYRCK--DCKEEIGYDLCKDCY-----ETPSKVPGR 351
>sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein precursor (CRIM-1)
Length = 1048
Score = 32.7 bits (73), Expect = 0.27
Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 27/110 (24%)
Frame = +2
Query: 17 NTTASEPNCDLQSCSKGDFSECRDCMPR----YCYGANDGCS-----NYVTKKFNCKVHD 169
N T +E +C K D + CR C + C G GCS + T NC++
Sbjct: 486 NCTLTEKDCIYSF--KLDQNGCRICQCKTREELCTGLISGCSLDCSFGFQTDAHNCEICQ 543
Query: 170 CHLKS--------------GY----DACRDCLIPNCPEMPSEIRGQVCSM 265
C + GY C C CPEMP G++C M
Sbjct: 544 CRPRPKKCKPIVCDKYCPFGYLKNKHGCEICRCKKCPEMPC---GKICPM 590
>sp|P22549|IPDE_DICDI Cyclic nucleotide phosphodiesterase inhibitor precursor (PDI)
Length = 237
Score = 32.3 bits (72), Expect = 0.35
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 26 ASEPNCDLQSCSKGDFSECRD--CMPRY-CYGANDGCSNYVTKKFNCKVHDCHLKSGYDA 196
AS NC L + S D + C D C P Y CY + C V + NC +D YD
Sbjct: 66 ASTGNCTLTTISCNDNNPCTDDFCHPGYGCYSVPNSCDPGVICQQNCNDND---PCTYDF 122
Query: 197 C 199
C
Sbjct: 123 C 123
>sp|P40798|STC_DROME Shuttle craft protein
Length = 1106
Score = 32.3 bits (72), Expect = 0.35
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = +2
Query: 35 PNCDLQS---CSKGDFSECRDCMPRYCYGANDG-CSNYVTKKFNCKVHDCHLKSGYDACR 202
P C Q+ C G + C + C A+D C TKK +C H C+++ D
Sbjct: 663 PPCPKQTGVKCRCGHMDQMIKCR-QLCNRADDARCKRRCTKKRSCGKHKCNVECCIDIDH 721
Query: 203 DCLIPNCPEMPSEIRGQVCSMDKSCG 280
DC +P C+ SCG
Sbjct: 722 DCPLP-------------CNRTLSCG 734
>sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
chain)
Length = 3110
Score = 31.2 bits (69), Expect = 0.78
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Frame = +2
Query: 89 CMPRYCYGANDGCSNYVTKKFNCKVH------DCHLKSGY-----DACRDCLIPNCP-EM 232
C P C+G + C + + NCK H D L Y DC CP +
Sbjct: 754 CEPCQCFGHAESCDDVTGECLNCKDHTGGPYCDKCLPGFYGEPTKGTSEDCQPCACPLNI 813
Query: 233 PSEIRGQVCSMDKSCG 280
PS C +D+S G
Sbjct: 814 PSNNFSPTCHLDRSLG 829
>sp|P60214|SC49B_TITCA Toxin Tc49b
Length = 64
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 116 NDGCS-NYVTKKFNCKVHDCHLKSGYDA-CRDCLIPNCPEMPSEIR 247
NDGC +T+ VH+C LK G D C L C MP ++
Sbjct: 9 NDGCKYGCITRPHQYCVHECELKKGTDGYCAYWLACYCYNMPDWVK 54
>sp|P32022|GIL1_ENTHI Galactose-inhibitable lectin 170 kDa subunit
Length = 1276
Score = 29.6 bits (65), Expect = 2.3
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 14 GNTTASEPNCDLQSCSKGDFSECRDCMPRYCYGANDGCSNYVTKKFNCKVHDCHLKSGYD 193
G++T S CD + +K ++ ++ YC N +Y CKV +C D
Sbjct: 578 GDSTGSVCKCDSTTGNKCQCNKVKN--GNYCNSKNHEICDYTGTTPQCKVSNC----TED 631
Query: 194 ACRD-CLIPNCPE 229
RD CLI C E
Sbjct: 632 LVRDGCLIKRCNE 644
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,888,258
Number of Sequences: 369166
Number of extensions: 606587
Number of successful extensions: 1560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 68,354,980
effective HSP length: 70
effective length of database: 55,423,530
effective search space used: 1718129430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)