Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_E15
(451 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein bet... 78 8e-15
sp|O35353|GBB4_RAT Guanine nucleotide-binding protein beta ... 75 9e-14
sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein bet... 75 9e-14
sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta... 75 9e-14
sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I... 75 9e-14
sp|P29387|GBB4_MOUSE Guanine nucleotide-binding protein bet... 74 2e-13
sp|P54311|GBB1_RAT Guanine nucleotide-binding protein G(I)/... 74 2e-13
sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I... 74 2e-13
sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/... 74 2e-13
sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I... 74 2e-13
>sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein beta subunit 1
sp|Q61ZF6|GBB1_CAEBR Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 78.2 bits (191), Expect = 8e-15
Identities = 32/36 (88%), Positives = 36/36 (100%)
Frame = +2
Query: 2 AGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGVLAGHDNRVSCLGV+EDGMA+CTGSWDSFL++WN
Sbjct: 305 AGVLAGHDNRVSCLGVTEDGMAVCTGSWDSFLKIWN 340
>sp|O35353|GBB4_RAT Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 74.7 bits (182), Expect = 9e-14
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +2
Query: 2 AGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGVLAGHDNRVSCLGV++DGMA+ TGSWDSFLR+WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
>sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 74.7 bits (182), Expect = 9e-14
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +2
Query: 2 AGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGVLAGHDNRVSCLGV++DGMA+ TGSWDSFLR+WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
>sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta subunit
Length = 341
Score = 74.7 bits (182), Expect = 9e-14
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +2
Query: 2 AGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGVLAGHDNRVSCLGV+EDGMA+ TGSWDSFL++WN
Sbjct: 306 AGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 341
>sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 74.7 bits (182), Expect = 9e-14
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = +2
Query: 2 AGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGVLAGHDNRVSCLGV+EDGMA+ TGSWDSFL++WN
Sbjct: 305 AGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 340
>sp|P29387|GBB4_MOUSE Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 73.6 bits (179), Expect = 2e-13
Identities = 30/36 (83%), Positives = 35/36 (97%)
Frame = +2
Query: 2 AGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
+GVLAGHDNRVSCLGV++DGMA+ TGSWDSFLR+WN
Sbjct: 305 SGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
>sp|P54311|GBB1_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62874|GBB1_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62873|GBB1_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62872|GBB1_CANFA Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62871|GBB1_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 73.6 bits (179), Expect = 2e-13
Identities = 30/36 (83%), Positives = 35/36 (97%)
Frame = +2
Query: 2 AGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGVLAGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
Length = 326
Score = 73.6 bits (179), Expect = 2e-13
Identities = 30/36 (83%), Positives = 35/36 (97%)
Frame = +2
Query: 2 AGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGVLAGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 291 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 326
Score = 28.1 bits (61), Expect = 9.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 14 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGH V L ++ DG +G+ D+ +++W+
Sbjct: 167 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWD 198
>sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
sp|P62880|GBB2_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
sp|P62879|GBB2_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
Length = 340
Score = 73.6 bits (179), Expect = 2e-13
Identities = 30/36 (83%), Positives = 35/36 (97%)
Frame = +2
Query: 2 AGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGVLAGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.1 bits (61), Expect = 9.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 14 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGH V L ++ DG +G+ D+ +++W+
Sbjct: 181 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWD 212
>sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1) (XGbeta1)
Length = 340
Score = 73.6 bits (179), Expect = 2e-13
Identities = 30/36 (83%), Positives = 35/36 (97%)
Frame = +2
Query: 2 AGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 109
AGVLAGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,470,223
Number of Sequences: 369166
Number of extensions: 897438
Number of successful extensions: 2638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2635
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)