Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_E04
(319 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 42 3e-04
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 40 0.002
sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (To... 39 0.004
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 39 0.005
sp|P55953|MT_STENE Metallothionein (MT) 34 0.12
sp|Q6L8H4|KRA51_HUMAN Keratin-associated protein 5-1 (Kerat... 33 0.16
sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precurs... 33 0.26
sp|Q90495|ECAR_ECHCA Ecarin precursor 32 0.35
sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (... 32 0.35
sp|P83626|TNR26_MOUSE Tumor necrosis factor receptor superf... 32 0.35
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 42.4 bits (98), Expect = 3e-04
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Frame = +3
Query: 51 CADTGDDCSSKTGEDCTN--GDVLDK-CAKSCHLCGECADSRPDCAFLKERGDCDKMD-D 218
C D +DCS ++ + C K+C+ C C D+ C RG C K D D
Sbjct: 107 CTDLANDCSYNQNRCSVKEYSSLMHRLCPKTCNACNICEDANKMCPIWVPRGFCSKFDHD 166
Query: 219 RV---CRKTCGVC 248
+V C K+C +C
Sbjct: 167 KVQKSCAKSCNIC 179
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +3
Query: 51 CADTGDDCSSKTGEDCTNGDVLDKCAKSCHLCGECADSRPDCAFLKER---GDCDKMDDR 221
C G + +KTG + G EC D DC++ + R + + R
Sbjct: 85 CPHNGTNPENKTGGNGGTGTQ------------ECTDLANDCSYNQNRCSVKEYSSLMHR 132
Query: 222 VCRKTCGVCS 251
+C KTC C+
Sbjct: 133 LCPKTCNACN 142
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Frame = +3
Query: 36 CEDATCADTGDDCS--SKTGEDCTN-GDVLDKCAKSCHLC------GECADSRPDCAFLK 188
C+ C + C ++ G+ +N G + +C SC +C G CAD DCA
Sbjct: 576 CDSPMCYNEDQCCPIWAQRGQCRSNPGYMTCQCKVSCGVCRPNYVYGPCADYHYDCAAWA 635
Query: 189 ERGDC--DKMDDRVCRKTCGVC 248
RG+C +K CR++C C
Sbjct: 636 RRGECLKNKWMPENCRRSCNTC 657
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Frame = +3
Query: 123 CAKSCHLCG-------ECADSRPDCAFLKERGDCDKMD---DRVCRKTCGVC 248
C SC C EC+D +CA G+C+K CR +C C
Sbjct: 489 CKASCRQCTPNYNINEECSDRHTNCAMWSRSGECNKNPLWMSENCRSSCQKC 540
>sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (Toxocara excretory-secretory
antigen 26) (TES-26)
Length = 262
Score = 38.9 bits (89), Expect = 0.004
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +3
Query: 51 CADTGDDCSSKTGEDCTN--GDVL-DKCAKSCHLCGECADSRPDCAF---LKERGDCDKM 212
C D+ DC++ G T VL ++C ++C+ C +C D +CA L + + +
Sbjct: 23 CMDSASDCAANAGSCFTRPVSQVLQNRCQRTCNTC-DCRDEANNCAASINLCQNPTFEPL 81
Query: 213 DDRVCRKTCGVCS 251
C+KTCG+C+
Sbjct: 82 VRDRCQKTCGLCA 94
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 36 CEDATCADTGDDCSSKTGEDCTNGD----VLDKCAKSCHLCGEC 155
C C D ++C++ C N V D+C K+C LC C
Sbjct: 54 CNTCDCRDEANNCAASINL-CQNPTFEPLVRDRCQKTCGLCAGC 96
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 38.5 bits (88), Expect = 0.005
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Frame = +3
Query: 15 GLIVAAMCEDATCADTGDDCSSKTGEDCTNGDVLDK-----------CAKSCHLCG---- 149
G V+ A+ A T C+ DCT L C K+C CG
Sbjct: 48 GTTVSGATTAASGATTASTCADDPNTDCTQYTSLCSNAKYTPLLQQFCPKTCGFCGGGST 107
Query: 150 ----ECADSRPDCAFLKERGDCDKM------DDRVCRKTCGVCS 251
+C DS +CA ++ G C + C KTC +C+
Sbjct: 108 AAPVQCVDSSTNCANWEKNGFCSSTFYDCANKKQYCAKTCKLCT 151
>sp|P55953|MT_STENE Metallothionein (MT)
Length = 64
Score = 33.9 bits (76), Expect = 0.12
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 51 CADTGDDCSSKTGEDCTNGDVLDKCAKSCHLCGECADSRPDCA 179
C G +C+ K E CT G+ C K CG+C ++ CA
Sbjct: 8 CCKEGKECACKGKECCTTGE----CCKDGTCCGKCTNAACKCA 46
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = +3
Query: 39 EDATCADTGDDCSSKTGEDCTNGDVLDKCAKSCHLCGE-------CADSRPDCA 179
E CA G +C + TGE C +G KC + C + C+ + +CA
Sbjct: 11 EGKECACKGKECCT-TGECCKDGTCCGKCTNAACKCADGCKCGSGCSCTEGNCA 63
>sp|Q6L8H4|KRA51_HUMAN Keratin-associated protein 5-1 (Keratin-associated protein 5.1)
(Ultrahigh sulfur keratin-associated protein 5.1)
Length = 278
Score = 33.5 bits (75), Expect = 0.16
Identities = 20/65 (30%), Positives = 26/65 (40%)
Frame = +3
Query: 48 TCADTGDDCSSKTGEDCTNGDVLDKCAKSCHLCGECADSRPDCAFLKERGDCDKMDDRVC 227
+C + C S G C +G + C SC CG CA S+ C + C K C
Sbjct: 189 SCGGSKGGCGSGCG-GCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCCK--PCCC 245
Query: 228 RKTCG 242
CG
Sbjct: 246 SSGCG 250
>sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precursor (Nematode astacin 13)
Length = 527
Score = 32.7 bits (73), Expect = 0.26
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Frame = +3
Query: 69 DCSSKTGEDCTNGD--VLDKCAKSCHLCGECADSRPDCAFLKERGDCD-----KMDDRVC 227
+ S G+ GD VL G+C D R DC FL G C+ + C
Sbjct: 415 EIGSSIGDKGDRGDNSVLSSLISIHSGLGKCEDRRKDCEFLARAGHCESRFSIRFMTENC 474
Query: 228 RKTCGVC 248
+CG C
Sbjct: 475 ANSCGKC 481
>sp|Q90495|ECAR_ECHCA Ecarin precursor
Length = 616
Score = 32.3 bits (72), Expect = 0.35
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +3
Query: 51 CADTGDDCSSKTGEDCTNGDVLDKCAKSCHLCGECADSRPDC 176
C D C K G +C NG+ DKC K EC +R DC
Sbjct: 431 CCDAAT-CKLKPGAECGNGECCDKC-KIRKAGTECRPARDDC 470
>sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C) (P230)
Length = 1746
Score = 32.3 bits (72), Expect = 0.35
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 81 KTGEDCTNGDVLDKCAKSCHLCGECADSRPDCAFLKERGDCDKM 212
+TGEDC+ +C CH G C R +C + DC +M
Sbjct: 429 RTGEDCSQL----RCPNDCHGRGRCVQGRCECEHGFQGYDCSEM 468
Score = 30.8 bits (68), Expect = 1.0
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Frame = +3
Query: 36 CEDATCAD----TGDDCSSKTGEDCTNGDVLDKCAKSCHLCGECADSRPDCAFLKERGDC 203
CE+ C G DCS + +C CH G C D R +C E DC
Sbjct: 356 CEEGQCVCDEGFAGADCSER------------RCPSDCHNRGRCLDGRCECDDGFEGEDC 403
Query: 204 DKM 212
++
Sbjct: 404 GEL 406
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Frame = +3
Query: 84 TGEDCTNGDVLDKCAKSCHLCGECADSR---------PDCAFLKERGDC 203
TGEDC +C C G C D R PDCA L DC
Sbjct: 492 TGEDCREL----RCPGDCSQRGRCVDGRCVCEHGFAGPDCADLACPSDC 536
>sp|P83626|TNR26_MOUSE Tumor necrosis factor receptor superfamily member 26 precursor (TNF
receptor homolog 3)
Length = 204
Score = 32.3 bits (72), Expect = 0.35
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 39 EDATCADTGDD-CSSKTGEDCTNGDVLDKCAKSCHLCGECADSR 167
E A C+ T D C K G C + + C + CH C C D R
Sbjct: 91 EVAKCSRTADRVCQCKQGTYCDS----ENCLERCHTCSSCPDGR 130
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,821,524
Number of Sequences: 369166
Number of extensions: 628194
Number of successful extensions: 2282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2275
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)