Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_E01
(655 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53590|SUCB2_PIG Succinyl-CoA ligase [GDP-forming] beta-... 225 7e-59
sp|Q96I99|SUCB2_HUMAN Succinyl-CoA ligase [GDP-forming] bet... 223 3e-58
sp|Q9Z2I8|SUCB2_MOUSE Succinyl-CoA ligase [GDP-forming] bet... 219 4e-57
sp|P53589|SUCB2_CAEEL Probable succinyl-CoA ligase [GDP-for... 204 2e-52
sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta... 169 4e-42
sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-form... 168 1e-41
sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] bet... 162 9e-40
sp|Q03184|SUCB_TRIVA Succinyl-CoA ligase [GDP-forming] beta... 154 1e-37
sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-... 154 2e-37
sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] bet... 154 2e-37
>sp|P53590|SUCB2_PIG Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaG chain)
(SCS-betaG) (GTP-specific succinyl-CoA synthetase beta
subunit)
Length = 433
Score = 225 bits (574), Expect = 7e-59
Identities = 119/216 (55%), Positives = 153/216 (70%)
Frame = +2
Query: 2 KGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLAVLMDR 181
KGGVHLTK+P V L K M+G L TKQT K+GV V+KVMVAEALDI RETYLA+LMDR
Sbjct: 102 KGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 161
Query: 182 TSGGLVVVSSPRGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLRFTSKQQID 361
+ G V+V SP+GG+DIEEVA NP I K ++DI +GI SQ +A++L F Q +
Sbjct: 162 SCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQ-N 220
Query: 362 EVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAFRQREIFSVHDP 541
+ Q++ L++LFL+ D TQ+E+NPFG TP GQ+VCFDAK+NFDDNA FRQ++IF++ D
Sbjct: 221 QAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDD- 279
Query: 542 VAEEQDpreIEAAQDGLNYIGFTRQHWLRCQRSGAG 649
E +P E EAA+ L YIG + C +GAG
Sbjct: 280 -KSENEPIENEAAKYDLKYIGLDGN--IACFVNGAG 312
Score = 33.5 bits (75), Expect = 0.50
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 561 PGKSKQLKMALITSGLHGNIGCVVNGAGLAM 653
P +++ K L GL GNI C VNGAGLAM
Sbjct: 285 PIENEAAKYDLKYIGLDGNIACFVNGAGLAM 315
>sp|Q96I99|SUCB2_HUMAN Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaG chain)
(SCS-betaG) (GTP-specific succinyl-CoA synthetase beta
subunit)
Length = 432
Score = 223 bits (568), Expect = 3e-58
Identities = 118/216 (54%), Positives = 152/216 (70%)
Frame = +2
Query: 2 KGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLAVLMDR 181
KGGVHLTK+P+ V L K M+G L TKQT K+GV V+KVMVAEALDI RETYLA+LMDR
Sbjct: 101 KGGVHLTKDPNVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 160
Query: 182 TSGGLVVVSSPRGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLRFTSKQQID 361
+ G V+V SP+GG+DIEEVA NP I K ++DI +GI SQ +A++L F +
Sbjct: 161 SCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVGPLK-S 219
Query: 362 EVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAFRQREIFSVHDP 541
+ Q+ L++LFL+ D TQ+E+NPFG TP GQ+VCFDAK+NFDDNA FRQ++IF++ D
Sbjct: 220 QAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDD- 278
Query: 542 VAEEQDpreIEAAQDGLNYIGFTRQHWLRCQRSGAG 649
E +P E EAA+ L YIG + C +GAG
Sbjct: 279 -KSENEPIENEAAKYDLKYIGLDGN--IACFVNGAG 311
Score = 33.5 bits (75), Expect = 0.50
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 561 PGKSKQLKMALITSGLHGNIGCVVNGAGLAM 653
P +++ K L GL GNI C VNGAGLAM
Sbjct: 284 PIENEAAKYDLKYIGLDGNIACFVNGAGLAM 314
>sp|Q9Z2I8|SUCB2_MOUSE Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaG chain)
(SCS-betaG) (GTP-specific succinyl-CoA synthetase beta
subunit)
Length = 404
Score = 219 bits (559), Expect = 4e-57
Identities = 116/216 (53%), Positives = 151/216 (69%)
Frame = +2
Query: 2 KGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLAVLMDR 181
KGGVHLTK+P V L + M+G L TKQT K+GV V+KVMVAEALDI RETYLA+LMDR
Sbjct: 73 KGGVHLTKDPKVVGELAQQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 132
Query: 182 TSGGLVVVSSPRGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLRFTSKQQID 361
+ G V+V SP+GG+DIEEVA +P I K ++DI +GI SQ +A++L F + +
Sbjct: 133 SHNGPVIVGSPQGGVDIEEVAASSPELIFKEQIDIFEGIKDSQAQRMAENLGFLGSLK-N 191
Query: 362 EVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAFRQREIFSVHDP 541
+ Q+ L+ LFL+ D TQ+E+NPFG TP GQ+VCFDAK+NFDDNA FRQ++IF++ D
Sbjct: 192 QAADQITKLYHLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDD- 250
Query: 542 VAEEQDpreIEAAQDGLNYIGFTRQHWLRCQRSGAG 649
E +P E EAA+ L YIG + C +GAG
Sbjct: 251 -KSENEPIENEAARYDLKYIGLDGN--IACFVNGAG 283
Score = 32.3 bits (72), Expect = 1.1
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 603 GLHGNIGCVVNGAGLAM 653
GL GNI C VNGAGLAM
Sbjct: 270 GLDGNIACFVNGAGLAM 286
>sp|P53589|SUCB2_CAEEL Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 415
Score = 204 bits (519), Expect = 2e-52
Identities = 111/215 (51%), Positives = 144/215 (66%)
Frame = +2
Query: 5 GGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLAVLMDRT 184
GGV +TK + M+G+RLVTKQT+ +GV V KVM+AE +DI RETYLAVLMDR
Sbjct: 86 GGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKVMIAEGVDIKRETYLAVLMDRE 145
Query: 185 SGGLVVVSSPRGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLRFTSKQQIDE 364
S G VVV+SP GGMDIE VA K P I KT +DI G+T+ Q +IA+ L+F K I
Sbjct: 146 SNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMTEGQSLKIAKDLQFEGK-LIGV 204
Query: 365 VGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAFRQREIFSVHDPV 544
++++ L+DLF+ D TQ+EINP T G++ C DAK+NFDD+AA+RQ+EIF+
Sbjct: 205 AAQEIKRLYDLFIAVDATQVEINPLVETADGRVFCVDAKMNFDDSAAYRQKEIFAYE--T 262
Query: 545 AEEQDpreIEAAQDGLNYIGFTRQHWLRCQRSGAG 649
EE Dpre++A Q LNYIG + C +GAG
Sbjct: 263 FEEHDpreVDAHQFNLNYIGMDGN--IACLVNGAG 295
Score = 32.3 bits (72), Expect = 1.1
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 603 GLHGNIGCVVNGAGLAM 653
G+ GNI C+VNGAGLAM
Sbjct: 282 GMDGNIACLVNGAGLAM 298
>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 421
Score = 169 bits (429), Expect = 4e-42
Identities = 90/216 (41%), Positives = 134/216 (62%)
Frame = +2
Query: 2 KGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLAVLMDR 181
KGGVH+ K + + MLGQ LVTKQT G +V KV + E L + E Y ++++DR
Sbjct: 92 KGGVHIVKR-DEAEEIAGKMLGQVLVTKQTGPQGKVVSKVYLCEKLSLVNEMYFSIILDR 150
Query: 182 TSGGLVVVSSPRGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLRFTSKQQID 361
S G ++++ +GG IE++A K P I+K +D+ GIT ++ L + + D
Sbjct: 151 KSAGPLIIACKKGGTSIEDLAEKFPDMIIKVPIDVFAGITDEDAAKVVDGLAPKAADRKD 210
Query: 362 EVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAFRQREIFSVHDP 541
+ +Q++ L++LF + DCT +EINP T Q+V DAKLNFDDNAAFRQ+E+F++ DP
Sbjct: 211 SI-EQVKKLYELFRKTDCTMLEINPLAETSTNQLVAADAKLNFDDNAAFRQKEVFAMRDP 269
Query: 542 VAEEQDpreIEAAQDGLNYIGFTRQHWLRCQRSGAG 649
++Dpre+ AA+ LNYIG + + C +GAG
Sbjct: 270 T--QEDpreVAAAKVDLNYIGLDGE--IGCMVNGAG 301
Score = 33.9 bits (76), Expect = 0.38
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 561 PGKSKQLKMALITSGLHGNIGCVVNGAGLAM 653
P + K+ L GL G IGC+VNGAGLAM
Sbjct: 274 preVAAAKVDLNYIGLDGEIGCMVNGAGLAM 304
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 447
Score = 168 bits (425), Expect = 1e-41
Identities = 95/216 (43%), Positives = 130/216 (60%)
Frame = +2
Query: 2 KGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLAVLMDR 181
KGGV + +P++ + M+G +L+TKQT G + V + E RE YLAVLMDR
Sbjct: 100 KGGVRVIYSPTEAKMFAEQMIGHKLITKQTGAQGRLCSAVYICERKFARREFYLAVLMDR 159
Query: 182 TSGGLVVVSSPRGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLRFTSKQQID 361
S G V+VSS +GGMDIE VA +NP AI T +DIN G+T +IA L F S+Q ++
Sbjct: 160 ASQGPVIVSSSQGGMDIEGVAKENPEAIHTTYIDINVGVTDEMARDIATKLGF-SEQCVE 218
Query: 362 EVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAFRQREIFSVHDP 541
E ++ L+ +F + D TQIEINP T +++ DAK FDDNA FRQ +IF + D
Sbjct: 219 EAKDTIQKLYKIFCEKDATQIEINPLSETSDHKVMAMDAKFGFDDNADFRQPDIFKLRD- 277
Query: 542 VAEEQDpreIEAAQDGLNYIGFTRQHWLRCQRSGAG 649
++DP E+ AAQ GLN+I + C +GAG
Sbjct: 278 -TTQEDPDEVRAAQAGLNFIKLDGD--IGCLVNGAG 310
Score = 31.2 bits (69), Expect = 2.5
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +3
Query: 606 LHGNIGCVVNGAGLAM 653
L G+IGC+VNGAGLAM
Sbjct: 298 LDGDIGCLVNGAGLAM 313
>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 162 bits (409), Expect = 9e-40
Identities = 86/216 (39%), Positives = 136/216 (62%)
Frame = +2
Query: 2 KGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLAVLMDR 181
KGGV + +P + + M+GQ+L+TKQT + G + ++V+V E RE Y A+ M+R
Sbjct: 116 KGGVKIVFSPEEAKAVSSQMIGQKLITKQTGEKGRICNQVLVCERKYPRREYYFAITMER 175
Query: 182 TSGGLVVVSSPRGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLRFTSKQQID 361
+ G V++ S +GG++IE+VA +NP AI+K +DI +GI K Q +AQ + F S +D
Sbjct: 176 SFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVTLAQKMGFPS-NIVD 234
Query: 362 EVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAFRQREIFSVHDP 541
+ + L++LFL++D T +EINP G+++C DAK+NFD N+A+RQ++IF + D
Sbjct: 235 SAAENMIKLYNLFLKYDATMVEINPMVEDSDGKVLCMDAKINFDSNSAYRQKKIFDLQD- 293
Query: 542 VAEEQDpreIEAAQDGLNYIGFTRQHWLRCQRSGAG 649
++D R+ EAA +NYIG + C +GAG
Sbjct: 294 -WSQEDERDKEAANADINYIGLDGS--IGCLVNGAG 326
Score = 33.5 bits (75), Expect = 0.50
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 603 GLHGNIGCVVNGAGLAM 653
GL G+IGC+VNGAGLAM
Sbjct: 313 GLDGSIGCLVNGAGLAM 329
>sp|Q03184|SUCB_TRIVA Succinyl-CoA ligase [GDP-forming] beta-chain, hydrogenosomal
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 407
Score = 154 bits (390), Expect = 1e-37
Identities = 85/216 (39%), Positives = 129/216 (59%)
Frame = +2
Query: 2 KGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLAVLMDR 181
K GVH K+ + + K MLG LVTKQT KDG++ VM+++ +++ RE Y A+L+DR
Sbjct: 74 KSGVHFVKSADEAAKIAKEMLGHHLVTKQTGKDGLLCQAVMLSDPVEVKRELYFAILLDR 133
Query: 182 TSGGLVVVSSPRGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLRFTSKQQID 361
+ VV++S GG++IEEVA +P I K +D +GIT+ I+ L T K D
Sbjct: 134 QTQSPVVIASTEGGVEIEEVAAHHPEKIHKFVLDGVEGITEEVAKNISTKLGLTGK-AYD 192
Query: 362 EVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAFRQREIFSVHDP 541
+++ L+ LF+ D TQ+E+NP T G+I+ D+K NFDD+A +RQ++IF D
Sbjct: 193 NGVVEMQKLWKLFVGSDATQVEVNPLAETTDGRIITVDSKFNFDDSAHYRQKQIFGYRD- 251
Query: 542 VAEEQDpreIEAAQDGLNYIGFTRQHWLRCQRSGAG 649
++ +P EI A + GLNY+ + C +GAG
Sbjct: 252 -LKQVNPFEIRAEKYGLNYVPLDGN--VACLVNGAG 284
Score = 30.4 bits (67), Expect = 4.2
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 606 LHGNIGCVVNGAGLAM 653
L GN+ C+VNGAGLAM
Sbjct: 272 LDGNVACLVNGAGLAM 287
>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 425
Score = 154 bits (389), Expect = 2e-37
Identities = 83/216 (38%), Positives = 133/216 (61%)
Frame = +2
Query: 2 KGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLAVLMDR 181
KGGV + +P + + M+G++L TKQT + G + ++V+V E RE Y A+ M+R
Sbjct: 78 KGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMER 137
Query: 182 TSGGLVVVSSPRGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLRFTSKQQID 361
+ G V++ S +GG++IE+VA + P AI+K +DI +GI K Q +AQ + F +D
Sbjct: 138 SFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGF-PPSIVD 196
Query: 362 EVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAFRQREIFSVHDP 541
+ + L++LFL++D T +EINP G ++C DAK+NFD N+A+RQ++IF + D
Sbjct: 197 SAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQD- 255
Query: 542 VAEEQDpreIEAAQDGLNYIGFTRQHWLRCQRSGAG 649
++D R+ +AA+ LNYIG + C +GAG
Sbjct: 256 -WTQEDERDKDAAKANLNYIGLDGN--IGCLVNGAG 288
Score = 35.4 bits (80), Expect = 0.13
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 603 GLHGNIGCVVNGAGLAM 653
GL GNIGC+VNGAGLAM
Sbjct: 275 GLDGNIGCLVNGAGLAM 291
>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 154 bits (389), Expect = 2e-37
Identities = 83/216 (38%), Positives = 132/216 (61%)
Frame = +2
Query: 2 KGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLAVLMDR 181
KGGV + +P + + M+G++L TKQT + G + ++V+V E RE Y A+ M+R
Sbjct: 116 KGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMER 175
Query: 182 TSGGLVVVSSPRGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLRFTSKQQID 361
+ G V++ S GG++IE+VA + P AI+K +DI +GI K Q ++AQ + F ++
Sbjct: 176 SFQGPVLIGSSHGGVNIEDVAAETPEAIIKEPIDIEEGIKKEQALQLAQKMGF-PPNIVE 234
Query: 362 EVGKQLRGLFDLFLQHDCTQIEINPFGVTPGGQIVCFDAKLNFDDNAAFRQREIFSVHDP 541
+ + L+ LFL++D T IEINP G ++C DAK+NFD N+A+RQ++IF + D
Sbjct: 235 SAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQD- 293
Query: 542 VAEEQDpreIEAAQDGLNYIGFTRQHWLRCQRSGAG 649
++D R+ +AA+ LNYIG + C +GAG
Sbjct: 294 -WTQEDERDKDAAKANLNYIGLDGN--IGCLVNGAG 326
Score = 35.4 bits (80), Expect = 0.13
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 603 GLHGNIGCVVNGAGLAM 653
GL GNIGC+VNGAGLAM
Sbjct: 313 GLDGNIGCLVNGAGLAM 329
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,031,558
Number of Sequences: 369166
Number of extensions: 1601346
Number of successful extensions: 4649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4524
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5413810770
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)