Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_D03
(728 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 414 e-115
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 414 e-115
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 414 e-115
sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin) 414 e-115
sp|P02554|TBB_PIG Tubulin beta chain 413 e-115
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 413 e-115
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 412 e-115
sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin cla... 412 e-115
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 412 e-115
sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15) 411 e-114
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 414 bits (1064), Expect = e-115
Identities = 202/204 (99%), Positives = 204/204 (100%)
Frame = +2
Query: 2 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 181
DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA
Sbjct: 224 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 283
Query: 182 LTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 361
LTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE
Sbjct: 284 LTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 343
Query: 362 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGM 541
WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGM
Sbjct: 344 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYTGEGM 403
Query: 542 DEMEFTEAESNMNDLVSEYQQYQD 613
DEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 414 bits (1063), Expect = e-115
Identities = 201/204 (98%), Positives = 204/204 (100%)
Frame = +2
Query: 2 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 181
DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA
Sbjct: 224 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 283
Query: 182 LTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 361
LTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE
Sbjct: 284 LTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 343
Query: 362 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGM 541
WIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGM
Sbjct: 344 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 403
Query: 542 DEMEFTEAESNMNDLVSEYQQYQD 613
DEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 414 bits (1063), Expect = e-115
Identities = 201/204 (98%), Positives = 204/204 (100%)
Frame = +2
Query: 2 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 181
DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA
Sbjct: 224 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 283
Query: 182 LTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 361
LTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE
Sbjct: 284 LTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 343
Query: 362 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGM 541
WIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGM
Sbjct: 344 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 403
Query: 542 DEMEFTEAESNMNDLVSEYQQYQD 613
DEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
Length = 292
Score = 414 bits (1063), Expect = e-115
Identities = 201/204 (98%), Positives = 204/204 (100%)
Frame = +2
Query: 2 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 181
DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA
Sbjct: 69 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 128
Query: 182 LTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 361
LTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE
Sbjct: 129 LTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 188
Query: 362 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGM 541
WIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGM
Sbjct: 189 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 248
Query: 542 DEMEFTEAESNMNDLVSEYQQYQD 613
DEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 249 DEMEFTEAESNMNDLVSEYQQYQD 272
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 413 bits (1062), Expect = e-115
Identities = 200/204 (98%), Positives = 204/204 (100%)
Frame = +2
Query: 2 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 181
DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA
Sbjct: 224 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 283
Query: 182 LTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 361
LTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVE
Sbjct: 284 LTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVE 343
Query: 362 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGM 541
WIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGM
Sbjct: 344 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 403
Query: 542 DEMEFTEAESNMNDLVSEYQQYQD 613
DEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 413 bits (1062), Expect = e-115
Identities = 200/204 (98%), Positives = 204/204 (100%)
Frame = +2
Query: 2 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 181
DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA
Sbjct: 224 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 283
Query: 182 LTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 361
LTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVE
Sbjct: 284 LTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVE 343
Query: 362 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGM 541
WIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGM
Sbjct: 344 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 403
Query: 542 DEMEFTEAESNMNDLVSEYQQYQD 613
DEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 412 bits (1060), Expect = e-115
Identities = 200/204 (98%), Positives = 204/204 (100%)
Frame = +2
Query: 2 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 181
DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA
Sbjct: 224 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 283
Query: 182 LTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 361
LTVPELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE
Sbjct: 284 LTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 343
Query: 362 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGM 541
WIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGM
Sbjct: 344 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 403
Query: 542 DEMEFTEAESNMNDLVSEYQQYQD 613
DEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
Length = 445
Score = 412 bits (1060), Expect = e-115
Identities = 200/204 (98%), Positives = 204/204 (100%)
Frame = +2
Query: 2 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 181
DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA
Sbjct: 224 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 283
Query: 182 LTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 361
LTVPELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE
Sbjct: 284 LTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 343
Query: 362 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGM 541
WIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGM
Sbjct: 344 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 403
Query: 542 DEMEFTEAESNMNDLVSEYQQYQD 613
DEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQD 427
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 412 bits (1058), Expect = e-115
Identities = 199/204 (97%), Positives = 203/204 (99%)
Frame = +2
Query: 2 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 181
DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA
Sbjct: 224 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 283
Query: 182 LTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 361
LTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVE
Sbjct: 284 LTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVE 343
Query: 362 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGM 541
WIPNNVKTAVCDIPPRGLKM+ TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGM
Sbjct: 344 WIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 403
Query: 542 DEMEFTEAESNMNDLVSEYQQYQD 613
DEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15)
Length = 445
Score = 411 bits (1056), Expect = e-114
Identities = 199/204 (97%), Positives = 204/204 (100%)
Frame = +2
Query: 2 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 181
DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA
Sbjct: 224 DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 283
Query: 182 LTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 361
LTVPELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE
Sbjct: 284 LTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVE 343
Query: 362 WIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGM 541
WIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGM
Sbjct: 344 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 403
Query: 542 DEMEFTEAESNMNDLVSEYQQYQD 613
DEMEFTEAESNMN+LVSEYQQYQD
Sbjct: 404 DEMEFTEAESNMNELVSEYQQYQD 427
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,682,990
Number of Sequences: 369166
Number of extensions: 1318167
Number of successful extensions: 3985
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3826
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6486082400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)