Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_C24
(781 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 489 e-138
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 489 e-138
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 487 e-137
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 486 e-137
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 486 e-137
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 483 e-136
sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain 482 e-136
sp|P02554|TBB_PIG Tubulin beta chain 482 e-136
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 482 e-136
sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin) 481 e-136
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 489 bits (1259), Expect = e-138
Identities = 236/260 (90%), Positives = 241/260 (92%)
Frame = +2
Query: 2 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLIDLEPGTMDSVRA 181
KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVL+DLEPGTMDSVR+
Sbjct: 19 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRS 78
Query: 182 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXX 361
GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHS 138
Query: 362 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 541
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Query: 542 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 721
T+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 199 TYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 258
Query: 722 PFPRLHFFMPGFAPLTSRGS 781
PFPRLHFFMPGFAPLTSRGS
Sbjct: 259 PFPRLHFFMPGFAPLTSRGS 278
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 489 bits (1259), Expect = e-138
Identities = 236/260 (90%), Positives = 241/260 (92%)
Frame = +2
Query: 2 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLIDLEPGTMDSVRA 181
KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVL+DLEPGTMDSVR+
Sbjct: 19 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRS 78
Query: 182 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXX 361
GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHS 138
Query: 362 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 541
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Query: 542 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 721
T+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 199 TYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 258
Query: 722 PFPRLHFFMPGFAPLTSRGS 781
PFPRLHFFMPGFAPLTSRGS
Sbjct: 259 PFPRLHFFMPGFAPLTSRGS 278
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 487 bits (1254), Expect = e-137
Identities = 235/260 (90%), Positives = 240/260 (92%)
Frame = +2
Query: 2 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLIDLEPGTMDSVRA 181
KFWEVISDEHGIDPTG YHGDSDLQLERINVYYNEATGGKYVPRAVL+DLEPGTMDSVR+
Sbjct: 19 KFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRS 78
Query: 182 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXX 361
GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHS 138
Query: 362 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 541
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Query: 542 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 721
T+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 199 TYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 258
Query: 722 PFPRLHFFMPGFAPLTSRGS 781
PFPRLHFFMPGFAPLTSRGS
Sbjct: 259 PFPRLHFFMPGFAPLTSRGS 278
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 486 bits (1251), Expect = e-137
Identities = 235/260 (90%), Positives = 240/260 (92%)
Frame = +2
Query: 2 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLIDLEPGTMDSVRA 181
KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVL+DLEPGTMDSVR+
Sbjct: 19 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRS 78
Query: 182 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXX 361
GPF Q+FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 79 GPFRQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHS 138
Query: 362 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 541
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Query: 542 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 721
T+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 199 TYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 258
Query: 722 PFPRLHFFMPGFAPLTSRGS 781
PFPRLHFFMPGFAPLTSRGS
Sbjct: 259 PFPRLHFFMPGFAPLTSRGS 278
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 486 bits (1250), Expect = e-137
Identities = 233/260 (89%), Positives = 241/260 (92%)
Frame = +2
Query: 2 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLIDLEPGTMDSVRA 181
KFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGGKYVPRA+L+DLEPGTMDSVR+
Sbjct: 19 KFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRS 78
Query: 182 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXX 361
GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHS 138
Query: 362 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 541
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Query: 542 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 721
T+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 199 TYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 258
Query: 722 PFPRLHFFMPGFAPLTSRGS 781
PFPRLHFFMPGFAPLTSRGS
Sbjct: 259 PFPRLHFFMPGFAPLTSRGS 278
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 483 bits (1242), Expect = e-136
Identities = 231/260 (88%), Positives = 240/260 (92%)
Frame = +2
Query: 2 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLIDLEPGTMDSVRA 181
KFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEATG KYVPRA+L+DLEPGTMDSVR+
Sbjct: 19 KFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRS 78
Query: 182 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXX 361
GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKE+ESCDCLQGFQ
Sbjct: 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHS 138
Query: 362 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 541
KIREEYPDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Query: 542 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 721
T+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 199 TYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 258
Query: 722 PFPRLHFFMPGFAPLTSRGS 781
PFPRLHFFMPGFAPLTSRGS
Sbjct: 259 PFPRLHFFMPGFAPLTSRGS 278
>sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain
Length = 444
Score = 482 bits (1241), Expect = e-136
Identities = 232/260 (89%), Positives = 239/260 (91%)
Frame = +2
Query: 2 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLIDLEPGTMDSVRA 181
KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG YVPRAVL+DLEPGTMDSVR+
Sbjct: 19 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRS 78
Query: 182 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXX 361
GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLD+VRKEAESCDCLQGFQ
Sbjct: 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHS 138
Query: 362 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 541
KIREE+PDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 139 LGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Query: 542 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 721
T+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 199 TYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 258
Query: 722 PFPRLHFFMPGFAPLTSRGS 781
PFPRLHFFMPG APLTSRGS
Sbjct: 259 PFPRLHFFMPGLAPLTSRGS 278
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 482 bits (1240), Expect = e-136
Identities = 231/260 (88%), Positives = 239/260 (91%)
Frame = +2
Query: 2 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLIDLEPGTMDSVRA 181
KFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYVPRA+L+DLEPGTMDSVR+
Sbjct: 19 KFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRS 78
Query: 182 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXX 361
GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKE+ESCDCLQGFQ
Sbjct: 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHS 138
Query: 362 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 541
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Query: 542 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 721
T+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 199 TYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 258
Query: 722 PFPRLHFFMPGFAPLTSRGS 781
PFPRLHFFMPGFAPLTSRGS
Sbjct: 259 PFPRLHFFMPGFAPLTSRGS 278
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 482 bits (1240), Expect = e-136
Identities = 232/260 (89%), Positives = 240/260 (92%)
Frame = +2
Query: 2 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLIDLEPGTMDSVRA 181
KFWEVISDEHGIDP+GTYHGD++LQLERINVYYNEATGGKYVPRAVL+DLEPGTMDSVR+
Sbjct: 19 KFWEVISDEHGIDPSGTYHGDNELQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRS 78
Query: 182 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXX 361
G FGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 79 GAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHS 138
Query: 362 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 541
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Query: 542 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 721
T+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 199 TYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 258
Query: 722 PFPRLHFFMPGFAPLTSRGS 781
PFPRLHFFMPGFAPLTSRGS
Sbjct: 259 PFPRLHFFMPGFAPLTSRGS 278
>sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 446
Score = 481 bits (1239), Expect = e-136
Identities = 231/259 (89%), Positives = 239/259 (92%)
Frame = +2
Query: 2 KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLIDLEPGTMDSVRA 181
KFWEVISDEHGIDPTG+YHGDSDLQL+RINVYYNEA+GGKYVPRAVL+DLEPGTMDSVR+
Sbjct: 19 KFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYVPRAVLVDLEPGTMDSVRS 78
Query: 182 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXX 361
GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAE CDCLQGFQ
Sbjct: 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQLTHS 138
Query: 362 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 541
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 198
Query: 542 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 721
TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 199 TFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 258
Query: 722 PFPRLHFFMPGFAPLTSRG 778
PFPRLHFF+PGFAPLTSRG
Sbjct: 259 PFPRLHFFIPGFAPLTSRG 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,777,945
Number of Sequences: 369166
Number of extensions: 1815334
Number of successful extensions: 5503
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4951
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)