Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_C21
(685 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 345 6e-95
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 345 8e-95
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 344 1e-94
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 343 3e-94
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 338 8e-93
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 338 8e-93
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 338 1e-92
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 338 1e-92
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 337 2e-92
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 337 2e-92
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 345 bits (885), Expect = 6e-95
Identities = 164/198 (82%), Positives = 182/198 (91%)
Frame = +2
Query: 2 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALT 181
PT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP +TTEVKSVEMHHEAL+
Sbjct: 241 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALS 300
Query: 182 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 361
EALPGDNVGFN+KNVSVK+IRRGNVC DSKSDP ++A F +QVII+NHPG+I AGYSPV
Sbjct: 301 EALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPV 360
Query: 362 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 541
+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPP
Sbjct: 361 IDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPP 420
Query: 542 LGRFAVRDMKQTVAVGVI 595
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 345 bits (884), Expect = 8e-95
Identities = 162/198 (81%), Positives = 184/198 (92%)
Frame = +2
Query: 2 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALT 181
PT+KPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM+VTFAPQ LTTEVKSVEMHHEAL
Sbjct: 241 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMIVTFAPQNLTTEVKSVEMHHEALQ 300
Query: 182 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 361
EALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++ F AQVIIMNHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPV 360
Query: 362 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 541
LDCHTAHIACKFAEL +K+DRRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPP
Sbjct: 361 LDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPP 420
Query: 542 LGRFAVRDMKQTVAVGVI 595
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 344 bits (882), Expect = 1e-94
Identities = 163/198 (82%), Positives = 182/198 (91%)
Frame = +2
Query: 2 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALT 181
PT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP +TTEVKSVEMHHEAL+
Sbjct: 241 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALS 300
Query: 182 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 361
EALPGDNVGFN+KNVSVK+IRRGNVC DSK+DP ++A F +QVII+NHPG+I AGYSPV
Sbjct: 301 EALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPV 360
Query: 362 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 541
+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPP
Sbjct: 361 IDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPP 420
Query: 542 LGRFAVRDMKQTVAVGVI 595
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 343 bits (879), Expect = 3e-94
Identities = 163/198 (82%), Positives = 179/198 (90%)
Frame = +2
Query: 2 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALT 181
PTNKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTFAP +TTEVKSVEMHHEAL
Sbjct: 241 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALV 300
Query: 182 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 361
EALPGDNVGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPV 360
Query: 362 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 541
LDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVETFS+YPP
Sbjct: 361 LDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPP 420
Query: 542 LGRFAVRDMKQTVAVGVI 595
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 338 bits (867), Expect = 8e-93
Identities = 162/198 (81%), Positives = 180/198 (90%)
Frame = +2
Query: 2 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALT 181
PT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+
Sbjct: 241 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300
Query: 182 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 361
EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPV 360
Query: 362 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 541
LDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPP
Sbjct: 361 LDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPP 420
Query: 542 LGRFAVRDMKQTVAVGVI 595
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 338 bits (867), Expect = 8e-93
Identities = 162/198 (81%), Positives = 180/198 (90%)
Frame = +2
Query: 2 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALT 181
PT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+
Sbjct: 241 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300
Query: 182 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 361
EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPV 360
Query: 362 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 541
LDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPP
Sbjct: 361 LDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPP 420
Query: 542 LGRFAVRDMKQTVAVGVI 595
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 338 bits (866), Expect = 1e-92
Identities = 161/198 (81%), Positives = 178/198 (89%)
Frame = +2
Query: 2 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALT 181
PT KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTFAP +TTEVKSVEMHHEAL
Sbjct: 241 PTAKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALQ 300
Query: 182 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 361
EALPGDNVGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPV 360
Query: 362 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 541
LDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPP
Sbjct: 361 LDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPP 420
Query: 542 LGRFAVRDMKQTVAVGVI 595
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 338 bits (866), Expect = 1e-92
Identities = 161/198 (81%), Positives = 180/198 (90%)
Frame = +2
Query: 2 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALT 181
PT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+
Sbjct: 241 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS 300
Query: 182 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 361
EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PV
Sbjct: 301 EALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPV 360
Query: 362 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 541
LDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPP
Sbjct: 361 LDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPP 420
Query: 542 LGRFAVRDMKQTVAVGVI 595
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 337 bits (863), Expect = 2e-92
Identities = 160/198 (80%), Positives = 180/198 (90%)
Frame = +2
Query: 2 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALT 181
PT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTFAP +TTEVKSVEMHHEALT
Sbjct: 241 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPVNVTTEVKSVEMHHEALT 300
Query: 182 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 361
EA+PGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PV
Sbjct: 301 EAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGAGYAPV 360
Query: 362 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 541
LDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPP
Sbjct: 361 LDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPP 420
Query: 542 LGRFAVRDMKQTVAVGVI 595
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 337 bits (863), Expect = 2e-92
Identities = 158/198 (79%), Positives = 183/198 (92%)
Frame = +2
Query: 2 PTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALT 181
PT++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGMVVTFAPQ +TTEVKSVEMHHE+L
Sbjct: 241 PTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLP 300
Query: 182 EALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPV 361
EA+PGDNVGFN+KNVSVK+IRRG+VCSDSK DPA++A F AQVIIMNHPG+I GY+PV
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360
Query: 362 LDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPP 541
LDCHTAHIACKF EL +K+DRR+GK +EDFPK KSGDAG+V L+P+KP+CVE+F++Y P
Sbjct: 361 LDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP 420
Query: 542 LGRFAVRDMKQTVAVGVI 595
LGRFAVRDM+QTVAVGVI
Sbjct: 421 LGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,421,008
Number of Sequences: 369166
Number of extensions: 1614654
Number of successful extensions: 5334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5039
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)