Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_C18
(900 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08810|IF2C_GALSU Translation initiation factor IF-2, ch... 35 0.29
sp|P47695|FTSH_MYCGE Cell division protein ftsH homolog 32 3.2
sp|Q9HFR4|ATG2_PICPA Autophagy-related protein 2 (Glucose-i... 31 5.4
sp|P47490|Y248_MYCGE Hypothetical protein MG248 30 7.0
sp|Q9CPB4|MRAW_PASMU S-adenosyl-methyltransferase mraW 30 7.0
>sp|Q08810|IF2C_GALSU Translation initiation factor IF-2, chloroplast
Length = 259
Score = 35.0 bits (79), Expect = 0.29
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 39 TNLLNCNSNMSSINTFNSTISPKEI-----NSNSKPHDFYLNHSSPLGYSAQANVNHVKS 203
++LL N N + N NS + K I N N+K + F LN + Y++ N+N
Sbjct: 29 SDLLKANKNNKTKNKKNSNFNFKSIEKNRLNYNNKKNKFILNRKAY--YNSNENINCQSD 86
Query: 204 TIYLVPNMVVNPI 242
IY+ N+ VN +
Sbjct: 87 IIYVEENITVNEL 99
>sp|P47695|FTSH_MYCGE Cell division protein ftsH homolog
Length = 702
Score = 31.6 bits (70), Expect = 3.2
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Frame = +3
Query: 48 LNCNSNMS---SINTFNSTISPKEINSNSKPHDFYLNHS-------SPLGYSAQANVNHV 197
LN SN + ++ F++ ++ K+IN ++ D L S SPL +A VN
Sbjct: 59 LNGGSNSTLTAKVSGFSNELTFKQINGSTYVTDTILQVSITFDGLNSPLTVTAHKTVNSN 118
Query: 198 KSTIYLVPNMVVNPINGMYMTVNN 269
+ I+ + N+ +N NG +TVN+
Sbjct: 119 GNVIFNIANLSINQSNGQ-ITVNS 141
>sp|Q9HFR4|ATG2_PICPA Autophagy-related protein 2 (Glucose-induced selective autophagy
protein 11) (Pexophagy zeocin-resistant mutant protein 7)
Length = 1862
Score = 30.8 bits (68), Expect = 5.4
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +3
Query: 363 VYYDESLQVDDINNKNHIENRIRQSYNQNRHF---QRFKKNGQD---LPDDLAMKNDHF- 521
VY D SL++ D N+ E+ NR + + F++N +D L + L MK+DHF
Sbjct: 1128 VYSDGSLEIID----NYYEHESVNQGLDNRTYGDLEVFEENSEDDISLENSLNMKHDHFY 1183
Query: 522 --SKQTNLKNLTSIPLNQN 572
S N +N +P N
Sbjct: 1184 HTSFMDNTRNTEHVPFKLN 1202
>sp|P47490|Y248_MYCGE Hypothetical protein MG248
Length = 218
Score = 30.4 bits (67), Expect = 7.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 651 FEIGCEEQQMVKKCIKENCKGFVLKSDFDSMEYLSNFSGWFVSKNDHF 508
++IGC+ + IK N ++ SD LSN+ + + N HF
Sbjct: 21 YDIGCDHSYLTSYLIKTNQNLTIVNSDISKNALLSNYQKFKNNNNIHF 68
>sp|Q9CPB4|MRAW_PASMU S-adenosyl-methyltransferase mraW
Length = 321
Score = 30.4 bits (67), Expect = 7.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 450 RHFQRFKKNGQDLPDDLAMKNDHFSKQTNLKNLTSIPLNQNQISKQIP 593
+HF R + G+D+P L +++D + LK + + Q +Q P
Sbjct: 261 KHFMRKQSKGEDIPKGLPLRDDQIQRTQTLKVIGKAIMPTEQEQQQNP 308
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,606,603
Number of Sequences: 369166
Number of extensions: 1904879
Number of successful extensions: 5134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5116
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)