Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_C09
(808 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O08730|GLYG_RAT Glycogenin-1 84 6e-16
sp|P13280|GLYG_RABIT Glycogenin-1 81 4e-15
sp|Q9R062|GLYG_MOUSE Glycogenin-1 80 5e-15
sp|P46976|GLYG_HUMAN Glycogenin-1 76 1e-13
sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2) 57 6e-08
sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1 39 0.022
sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2 33 1.2
sp|Q88YK3|HPRK_LACPL HPr kinase/phosphorylase (HPrK/P) (HPr... 32 2.7
sp|P16534|HLYD_PASHA Leukotoxin secretion protein D 30 7.8
sp|P55125|HLYD_PASSP Leukotoxin secretion protein D 30 7.8
>sp|O08730|GLYG_RAT Glycogenin-1
Length = 333
Score = 83.6 bits (205), Expect = 6e-16
Identities = 50/142 (35%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Frame = +3
Query: 6 SQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV--IFQEGCGQNYESLQLWW 179
S + YSYLPA+ F + KV+HF+G KPW++T++ T +V Q+ + E L LWW
Sbjct: 191 SLSIYSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSVKCESQDPIVSHPEFLNLWW 250
Query: 180 TTFIAYTKPLLHDE-----------MGGVCGRMASLDVSSFVP-HEGKFSPKSHQQAWEH 323
TF PLL M V G ++ L P + S + ++ WE
Sbjct: 251 DTFTTNVLPLLQHHGLVKDAGSYLMMEHVTGALSDLSFGEAPPASQPSLSSEERKERWEQ 310
Query: 324 GIIDYRGLDRFENIKMHLDSKL 389
G DY G D F+NIK LD+ L
Sbjct: 311 GQADYMGADSFDNIKRKLDTYL 332
>sp|P13280|GLYG_RABIT Glycogenin-1
Length = 333
Score = 80.9 bits (198), Expect = 4e-15
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Frame = +3
Query: 6 SQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQ--EGCGQNYESLQLWW 179
S + YSYLPA+ F A+ KV+HF+G KPW++T+D+ T +V + + + + L +WW
Sbjct: 191 SISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWW 250
Query: 180 TTFIAYTKPLLHD--EMGGVCGRMASLDVSSFVPH----------EGKFSPKSHQQAWEH 323
F PLL + C DVS V H + S + ++ WE
Sbjct: 251 DIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLSLGETPATTQPFVSSEERKERWEQ 310
Query: 324 GIIDYRGLDRFENIKMHLDSKL 389
G DY G D F+NIK LD+ L
Sbjct: 311 GQADYMGADSFDNIKKKLDTYL 332
>sp|Q9R062|GLYG_MOUSE Glycogenin-1
Length = 333
Score = 80.5 bits (197), Expect = 5e-15
Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Frame = +3
Query: 6 SQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV--IFQEGCGQNYESLQLWW 179
S + YSYLPA+ F + KV+HF+G KPW++T++ T +V Q+ + E L LWW
Sbjct: 191 SISIYSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSVNCDSQDPTVSHPEFLNLWW 250
Query: 180 TTFIAYTKPLLHDE-----------MGGVCGRMASLDVSSF-VPHEGKFSPKSHQQAWEH 323
TF PLL M V G ++ L + S + ++ WE
Sbjct: 251 DTFTTNVLPLLQHHGLVKDASSYLMMEHVSGALSDLSFGEAPAAPQPSMSSEERKERWEQ 310
Query: 324 GIIDYRGLDRFENIKMHLDSKL 389
G DY G D F+NIK LD+ L
Sbjct: 311 GQADYMGADSFDNIKRKLDTYL 332
>sp|P46976|GLYG_HUMAN Glycogenin-1
Length = 350
Score = 75.9 bits (185), Expect = 1e-13
Identities = 53/160 (33%), Positives = 69/160 (43%), Gaps = 32/160 (20%)
Frame = +3
Query: 6 SQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQEGCGQNY---ESLQLW 176
S + YSYLPA+ F A KV+HF+G KPW++T+D T +V E N E L LW
Sbjct: 191 SISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSV-KSEAHDPNMTHPEFLILW 249
Query: 177 WTTFIAYTKPLLHD-------------------EMGGVCGRMASLDVSSFVPH------- 278
W F PLL + CG DVS + H
Sbjct: 250 WNIFTTNVLPLLQQFGLVKDTCSYVNVLSDLVYTLAFSCGFCRKEDVSGAISHLSLGEIP 309
Query: 279 ---EGKFSPKSHQQAWEHGIIDYRGLDRFENIKMHLDSKL 389
+ S + ++ WE G DY G D F+NIK LD+ L
Sbjct: 310 AMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYL 349
>sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2)
Length = 501
Score = 57.0 bits (136), Expect = 6e-08
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Frame = +3
Query: 6 SQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQEGCGQNYES---LQLW 176
S Y+Y PA+ F + KV+HF+G KPW++ ++ +G+V+ Q + L LW
Sbjct: 224 SNTMYTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSVSSSQHQAAFLHLW 283
Query: 177 WTTFIAYTKP-----------------LLHDEMGGVCGRMAS 251
WT + P L H ++GG C AS
Sbjct: 284 WTVYQNNVLPLYKSVQAGEARASPGHTLCHSDVGGPCADSAS 325
Score = 33.5 bits (75), Expect = 0.70
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 285 KFSPKSHQQAWEHGIIDYRGLDRFENIKMHLD 380
+ SP+ ++ WE G IDY G D F I+ LD
Sbjct: 466 ELSPEEERRKWEEGRIDYMGKDAFARIQEKLD 497
>sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1
Length = 480
Score = 38.5 bits (88), Expect = 0.022
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 18 YSYLPAYTHFRADIKVLHFIGPHKPW 95
Y PA +F+ IK++HFIG HKPW
Sbjct: 94 YQSSPAMNYFKPSIKLIHFIGKHKPW 119
>sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2
Length = 380
Score = 32.7 bits (73), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 18 YSYLPAYTHFRADIKVLHFIGPHKPW-HHTFDSD 116
Y PA F+ I+++HFIG KPW +T D D
Sbjct: 232 YQSSPAMNFFQQHIRLIHFIGTFKPWSRNTTDYD 265
>sp|Q88YK3|HPRK_LACPL HPr kinase/phosphorylase (HPrK/P) (HPr(Ser) kinase/phosphorylase)
Length = 315
Score = 31.6 bits (70), Expect = 2.7
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +3
Query: 159 ESLQLWWTTFIAYTKPLLHDEMGGVCGRMASLDVSSFVPHEGKFSPKSHQQAWEHGIIDY 338
E +QL T AY+K + HDE + +M L +FV G P+ QA E +
Sbjct: 52 ERVQLLGKTETAYSKNMSHDERLMIFRKMCQLTTPAFVISTGLPVPEELVQAGEENGVPI 111
Query: 339 RGLDR-----FENIKMHLDSKLA 392
G N+ +L+ KLA
Sbjct: 112 LGTKMTSSRILSNMTNYLEGKLA 134
>sp|P16534|HLYD_PASHA Leukotoxin secretion protein D
Length = 478
Score = 30.0 bits (66), Expect = 7.8
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -1
Query: 808 RFGKSIITIKIKRNIE*SRQLAIDVINNNTQKQA 707
+F KS + K+K++IE RQL +++ NN ++QA
Sbjct: 293 QFFKSDVLEKLKQHIENERQLRLELEKNNQRRQA 326
>sp|P55125|HLYD_PASSP Leukotoxin secretion protein D
Length = 478
Score = 30.0 bits (66), Expect = 7.8
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -1
Query: 808 RFGKSIITIKIKRNIE*SRQLAIDVINNNTQKQA 707
+F KS + K+K++IE RQL +++ NN ++QA
Sbjct: 293 QFFKSDVLEKLKQHIENERQLQLELEKNNQRRQA 326
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,153,770
Number of Sequences: 369166
Number of extensions: 1695168
Number of successful extensions: 5131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4862
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)