Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_C06
(242 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 143 1e-34
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 142 2e-34
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 142 2e-34
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 142 2e-34
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 142 3e-34
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 141 5e-34
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 141 5e-34
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 138 3e-33
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 138 5e-33
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 138 5e-33
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 143 bits (360), Expect = 1e-34
Identities = 61/80 (76%), Positives = 73/80 (91%)
Frame = +1
Query: 1 YTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVPFVPISGWNGDN 180
YTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD V FVPISGWNGDN
Sbjct: 141 YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDN 200
Query: 181 MIEESTNMPWYKGWEITRKN 240
M+E S+NMPW+KGW++TRK+
Sbjct: 201 MLEPSSNMPWFKGWKVTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 142 bits (359), Expect = 2e-34
Identities = 61/80 (76%), Positives = 72/80 (90%)
Frame = +1
Query: 1 YTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVPFVPISGWNGDN 180
YTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD V FVPISGWNGDN
Sbjct: 141 YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDN 200
Query: 181 MIEESTNMPWYKGWEITRKN 240
M+E S NMPW+KGW++TRK+
Sbjct: 201 MLEPSANMPWFKGWKVTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 142 bits (359), Expect = 2e-34
Identities = 61/80 (76%), Positives = 72/80 (90%)
Frame = +1
Query: 1 YTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVPFVPISGWNGDN 180
YTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD V FVPISGWNGDN
Sbjct: 141 YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDN 200
Query: 181 MIEESTNMPWYKGWEITRKN 240
M+E S NMPW+KGW++TRK+
Sbjct: 201 MLEPSANMPWFKGWKVTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 142 bits (359), Expect = 2e-34
Identities = 61/80 (76%), Positives = 72/80 (90%)
Frame = +1
Query: 1 YTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVPFVPISGWNGDN 180
YTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD V FVPISGWNGDN
Sbjct: 141 YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDN 200
Query: 181 MIEESTNMPWYKGWEITRKN 240
M+E S NMPW+KGW++TRK+
Sbjct: 201 MLEPSANMPWFKGWKVTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 142 bits (357), Expect = 3e-34
Identities = 61/79 (77%), Positives = 71/79 (89%)
Frame = +1
Query: 1 YTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVPFVPISGWNGDN 180
YTLGVKQ+IVG+NKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD V FVPISGWNGDN
Sbjct: 141 YTLGVKQLIVGINKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDN 200
Query: 181 MIEESTNMPWYKGWEITRK 237
M+E S NMPW+KGW+ITRK
Sbjct: 201 MLEPSPNMPWFKGWKITRK 219
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 141 bits (355), Expect = 5e-34
Identities = 61/79 (77%), Positives = 71/79 (89%)
Frame = +1
Query: 1 YTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVPFVPISGWNGDN 180
+TLGVKQ+I+GVNKMDSTEPPFS KRFEEI KEV +Y+KK+GY P VPFVPISGW+GDN
Sbjct: 141 FTLGVKQLIIGVNKMDSTEPPFSQKRFEEITKEVSAYIKKIGYNPATVPFVPISGWHGDN 200
Query: 181 MIEESTNMPWYKGWEITRK 237
M+E STNMPW+KGW+I RK
Sbjct: 201 MLEASTNMPWFKGWKIERK 219
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 141 bits (355), Expect = 5e-34
Identities = 61/79 (77%), Positives = 71/79 (89%)
Frame = +1
Query: 1 YTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVPFVPISGWNGDN 180
+TLGVKQ+I+GVNKMDSTEPPFS KRFEEI KEV +Y+KK+GY P VPFVPISGW+GDN
Sbjct: 141 FTLGVKQLIIGVNKMDSTEPPFSQKRFEEITKEVSAYIKKIGYNPATVPFVPISGWHGDN 200
Query: 181 MIEESTNMPWYKGWEITRK 237
M+E STNMPW+KGW+I RK
Sbjct: 201 MLEASTNMPWFKGWKIERK 219
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 138 bits (348), Expect = 3e-33
Identities = 60/79 (75%), Positives = 71/79 (89%)
Frame = +1
Query: 1 YTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVPFVPISGWNGDN 180
+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY P AV FVPISGW+GDN
Sbjct: 141 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 200
Query: 181 MIEESTNMPWYKGWEITRK 237
M+E ST MPW+KGW++ RK
Sbjct: 201 MLEPSTKMPWFKGWQVERK 219
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 138 bits (347), Expect = 5e-33
Identities = 60/79 (75%), Positives = 70/79 (88%)
Frame = +1
Query: 1 YTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVPFVPISGWNGDN 180
+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY P AV FVPISGW+GDN
Sbjct: 127 FTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 186
Query: 181 MIEESTNMPWYKGWEITRK 237
M+E ST MPW+KGW + RK
Sbjct: 187 MLEASTKMPWFKGWNVERK 205
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 138 bits (347), Expect = 5e-33
Identities = 60/79 (75%), Positives = 70/79 (88%)
Frame = +1
Query: 1 YTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVPFVPISGWNGDN 180
+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY P AV FVPISGW+GDN
Sbjct: 127 FTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 186
Query: 181 MIEESTNMPWYKGWEITRK 237
M+E ST MPW+KGW + RK
Sbjct: 187 MLEASTKMPWFKGWNVERK 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,669,472
Number of Sequences: 369166
Number of extensions: 549607
Number of successful extensions: 1642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)