Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_C02
(828 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26481|RL5_STYCL 60S ribosomal protein L5 274 2e-73
sp|O76190|RL5_BOMMO 60S ribosomal protein L5 266 7e-71
sp|P49405|RL5_CAEEL 60S ribosomal protein L5 256 7e-68
sp|O65353|RL5_HELAN 60S ribosomal protein L5 253 5e-67
sp|O44248|RL5_ANOGA 60S ribosomal protein L5 253 6e-67
sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A 252 8e-67
sp|P09895|RL5_RAT 60S ribosomal protein L5 252 1e-66
sp|P47962|RL5_MOUSE 60S ribosomal protein L5 251 1e-66
sp|P46777|RL5_HUMAN 60S ribosomal protein L5 251 2e-66
sp|P22451|RL5_CHICK 60S ribosomal protein L5 251 2e-66
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5
Length = 295
Score = 274 bits (701), Expect = 2e-73
Identities = 140/268 (52%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Frame = +3
Query: 33 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 212
RRR+GKTDY+ARKRL+ QDKNKYNTPKYR++VRFTN+DI+CQI YARI+GD V+ +AY+H
Sbjct: 22 RRRQGKTDYFARKRLVVQDKNKYNTPKYRMIVRFTNKDIVCQIAYARIEGDVVICAAYAH 81
Query: 213 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 389
ELPRYG+K +DE Y G T++DG +E +D +
Sbjct: 82 ELPRYGVKVGLTNYAAAYCTGLLLSRRLLNKFGLDEIYEGQTEIDGDEFYVEDVDGKPGA 141
Query: 390 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFG 569
F A LD GL RT+TGA VFGAMKGA DGGL+IPHS KRFPGY E ++A++H+ IFG
Sbjct: 142 FRAFLDVGLARTTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFG 201
Query: 570 KHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPY 746
HV +M L EE+E F RQFS+YI+ G++ + +EE H AIREDP+P K KT +
Sbjct: 202 GHVSNYMKELEEEDEEAFKRQFSQYIKHGVTADTVEEMYTKAHAAIREDPTPKK--KTDF 259
Query: 747 TG-PKITLKKKMNLLQKRDRIKQIKDTY 827
G K +KKM Q+RDR+KQ K ++
Sbjct: 260 AGKTKRWNRKKMTFSQRRDRVKQKKASF 287
>sp|O76190|RL5_BOMMO 60S ribosomal protein L5
Length = 299
Score = 266 bits (679), Expect = 7e-71
Identities = 137/268 (51%), Positives = 174/268 (64%), Gaps = 3/268 (1%)
Frame = +3
Query: 33 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 212
RRREGKTDYYARKRL+ QDKNKYNTPKYRL+VR +N+D+ CQ+ Y+RI+GD ++ +AYSH
Sbjct: 22 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSH 81
Query: 213 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 389
ELPRYG+K +D Y G TDV G ++E +D
Sbjct: 82 ELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGA 141
Query: 390 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFG 569
F LD GL RT+TG VFGAMKGAVDGGLN+PHS KRFPGY E K+NA++H+ IFG
Sbjct: 142 FRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 201
Query: 570 KHVGEFMSVLE-ENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTE-KTP 743
HV E+M LE ++E F RQFSKYI+ G++ + IE HEAIR DPS K E K
Sbjct: 202 LHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKD 261
Query: 744 YTGPKITLKKKMNLLQKRDRIKQIKDTY 827
K K+K+ L ++++RIKQ K ++
Sbjct: 262 SVKQKRWNKRKLTLAERKNRIKQKKASF 289
>sp|P49405|RL5_CAEEL 60S ribosomal protein L5
Length = 293
Score = 256 bits (653), Expect = 7e-68
Identities = 127/271 (46%), Positives = 177/271 (65%), Gaps = 6/271 (2%)
Frame = +3
Query: 27 LMRRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAY 206
L RRREGKTDYYARKRL QDKNKYNTPKYRL+VR TN+D++ Q+ Y++I+GD V++SAY
Sbjct: 20 LRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAY 79
Query: 207 SHELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLEIDEERR 386
SHELPRYGLK +D Y G ++ G+ ++E + +R
Sbjct: 80 SHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRA 139
Query: 387 PFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIF 566
PF AVLD GL RT+TG+ +F MKG DGG+N+PHSE RF G+ +E +YNA+ H+DRI
Sbjct: 140 PFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRIL 199
Query: 567 GKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTP 743
GKHV ++M+ L EE+E + RQFSK++ AG++ +N+ T VH AIR D SPA +
Sbjct: 200 GKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKKAAK 259
Query: 744 ----YTGPKITL-KKKMNLLQKRDRIKQIKD 821
+T ++T ++K + K+ + Q+K+
Sbjct: 260 PSKRHTAKRLTYDERKQRVADKKALLLQLKE 290
>sp|O65353|RL5_HELAN 60S ribosomal protein L5
Length = 297
Score = 253 bits (646), Expect = 5e-67
Identities = 128/264 (48%), Positives = 177/264 (67%), Gaps = 2/264 (0%)
Frame = +3
Query: 33 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 212
RRREGKTDY+ARKRLI QDKNKYNTPKYRLVVRF+NRDI CQ+ Y+RI+GDK+L +AY+H
Sbjct: 22 RRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAH 81
Query: 213 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 389
ELP+YG+K +D+ Y+G+T+V G+ +++ +++
Sbjct: 82 ELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGA 141
Query: 390 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFG 569
F LD GL+RT+TGA VFGAMKGAVDGGLNI HS KRFPG+ E ++NAD+H+ IFG
Sbjct: 142 FRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFG 201
Query: 570 KHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPY 746
+HV E+M L EE++ + RQFS+YI+ G++ + IE HEAIR +P+ K +
Sbjct: 202 QHVAEYMRQLAEEDDEAYKRQFSQYIKLGLNADAIEGLYKKAHEAIRANPARKTVAKKAH 261
Query: 747 TGPKITLKKKMNLLQKRDRIKQIK 818
+ T +KK+ Q++ ++ K
Sbjct: 262 PKKRWT-EKKLTREQRQGKVAAAK 284
>sp|O44248|RL5_ANOGA 60S ribosomal protein L5
Length = 327
Score = 253 bits (645), Expect = 6e-67
Identities = 130/244 (53%), Positives = 160/244 (65%), Gaps = 4/244 (1%)
Frame = +3
Query: 33 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 212
RRREGKTDYYARKRLI+QDKNKYNTPK+RL+VR +NRDI CQI Y RI+GD+++ +AYSH
Sbjct: 22 RRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYRRIEGDRIVCAAYSH 81
Query: 213 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 389
ELPRYG+K +D Y G TDV G+ +E +DE
Sbjct: 82 ELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAA 141
Query: 390 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFG 569
F LD GL RT+TG+ VFGAMKGAVDGGLNIPHS KRFPGYS E +NA++H+D IFG
Sbjct: 142 FRCYLDVGLARTTTGSRVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFG 201
Query: 570 KHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKT--EKT 740
HV +M L EE+E F RQFSKYI GI ++IE H +IR+ P + ++
Sbjct: 202 LHVANYMRTLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASIRKIPPSRRNPRRRS 261
Query: 741 PYTG 752
P +G
Sbjct: 262 PRSG 265
>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A
Length = 296
Score = 252 bits (644), Expect = 8e-67
Identities = 129/267 (48%), Positives = 174/267 (65%), Gaps = 2/267 (0%)
Frame = +3
Query: 33 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 212
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 213 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 389
ELP+YG+K +D+ Y G +V G ++E ID E
Sbjct: 82 ELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGA 141
Query: 390 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFG 569
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++N ++H+ IF
Sbjct: 142 FTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFA 201
Query: 570 KHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPY 746
++V E+M +L EE+E + +QFS+YI+ G++ + +E+ H IRE+P K K
Sbjct: 202 QNVAEYMRLLMEEDEDAYKKQFSQYIKNGVTADQVEDLYKKAHAGIRENPVHEKKPKKE- 260
Query: 747 TGPKITLKKKMNLLQKRDRIKQIKDTY 827
K + K++L QK+DR+ Q K ++
Sbjct: 261 VKKKRWNRAKLSLEQKKDRVAQKKASF 287
>sp|P09895|RL5_RAT 60S ribosomal protein L5
Length = 297
Score = 252 bits (643), Expect = 1e-66
Identities = 130/267 (48%), Positives = 176/267 (65%), Gaps = 2/267 (0%)
Frame = +3
Query: 33 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 212
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 213 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 389
ELP+YG+K MD+ Y G +V+G ++E ID +
Sbjct: 82 ELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGA 141
Query: 390 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFG 569
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+ I G
Sbjct: 142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
Query: 570 KHVGEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPY 746
++V ++M ++EE+E + +QFS+YI+ ++ + +EE H AIRE+P K K
Sbjct: 202 QNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKRE- 260
Query: 747 TGPKITLKKKMNLLQKRDRIKQIKDTY 827
K + KM+L QK+DR+ Q K ++
Sbjct: 261 VKKKRWNRPKMSLAQKKDRVAQKKASF 287
>sp|P47962|RL5_MOUSE 60S ribosomal protein L5
Length = 297
Score = 251 bits (642), Expect = 1e-66
Identities = 130/267 (48%), Positives = 176/267 (65%), Gaps = 2/267 (0%)
Frame = +3
Query: 33 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 212
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 213 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 389
ELP+YG+K MD+ Y G +V+G ++E ID +
Sbjct: 82 ELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGA 141
Query: 390 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFG 569
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+ I G
Sbjct: 142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
Query: 570 KHVGEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPY 746
++V ++M ++EE+E + +QFS+YI+ ++ + +EE H AIRE+P K K
Sbjct: 202 QNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKRE- 260
Query: 747 TGPKITLKKKMNLLQKRDRIKQIKDTY 827
K + KM+L QK+DR+ Q K ++
Sbjct: 261 VKKKRWNRPKMSLAQKKDRVAQKKASF 287
>sp|P46777|RL5_HUMAN 60S ribosomal protein L5
Length = 297
Score = 251 bits (641), Expect = 2e-66
Identities = 130/267 (48%), Positives = 175/267 (65%), Gaps = 2/267 (0%)
Frame = +3
Query: 33 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 212
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 213 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 389
ELP+YG+K MD+ Y G +V G ++E ID +
Sbjct: 82 ELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGA 141
Query: 390 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFG 569
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+ I G
Sbjct: 142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
Query: 570 KHVGEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPY 746
++V ++M ++EE+E + +QFS+YI+ ++ + +EE H AIRE+P K K
Sbjct: 202 QNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKE- 260
Query: 747 TGPKITLKKKMNLLQKRDRIKQIKDTY 827
K + KM+L QK+DR+ Q K ++
Sbjct: 261 VKKKRWNRPKMSLAQKKDRVAQKKASF 287
>sp|P22451|RL5_CHICK 60S ribosomal protein L5
Length = 297
Score = 251 bits (641), Expect = 2e-66
Identities = 127/267 (47%), Positives = 175/267 (65%), Gaps = 2/267 (0%)
Frame = +3
Query: 33 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 212
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 213 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 389
ELP+YG+K +D+ Y G +V G ++E +D +
Sbjct: 82 ELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGA 141
Query: 390 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFG 569
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+ I G
Sbjct: 142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
Query: 570 KHVGEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPY 746
++V ++M ++EE+E + +QFS+YI+ I+ + +EE H AIR++P K K
Sbjct: 202 QNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREV 261
Query: 747 TGPKITLKKKMNLLQKRDRIKQIKDTY 827
++ KM+L QK+DR+ Q K ++
Sbjct: 262 KKKRVN-STKMSLAQKKDRVAQKKASF 287
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,157,272
Number of Sequences: 369166
Number of extensions: 1882134
Number of successful extensions: 6726
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6622
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)