Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_C01
(510 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52478|UBC1_CAEEL Ubiquitin-conjugating enzyme E2 1 (Ubi... 237 1e-62
sp|Q9Z255|UBE2A_MOUSE Ubiquitin-conjugating enzyme E2 A (Ub... 236 2e-62
sp|P63146|UBE2B_HUMAN Ubiquitin-conjugating enzyme E2 B (Ub... 235 5e-62
sp|P25153|UBCD6_DROME Ubiquitin-conjugating enzyme E2-17 kD... 233 2e-61
sp|P35130|UBC2_MEDSA Ubiquitin-conjugating enzyme E2-17 kDa... 219 4e-57
sp|P25865|UBC1_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 218 9e-57
sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 217 1e-56
sp|P25866|UBC2_WHEAT Ubiquitin-conjugating enzyme E2-17 kDa... 216 2e-56
sp|P42746|UBC3_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 204 1e-52
sp|P23566|UBC2_SCHPO Ubiquitin-conjugating enzyme E2-17 kDa... 203 2e-52
>sp|P52478|UBC1_CAEEL Ubiquitin-conjugating enzyme E2 1 (Ubiquitin-protein ligase 1)
(Ubiquitin carrier protein 1)
Length = 192
Score = 237 bits (605), Expect = 1e-62
Identities = 111/137 (81%), Positives = 121/137 (88%)
Frame = +3
Query: 3 KRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFSEEYPNKPPRVVFT 182
K+LQ+DPPAGV GAP +DNI+ W A+IFGP TPFEDGTF L LEF+EEYPNKPP V F
Sbjct: 14 KKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFI 73
Query: 183 SKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNSPANSVAAQLYTEN 362
SKMFHPNVYADGSICLDIL N WSPTYDV AILTSIQSLLDEPNPNSPANS+AAQLY EN
Sbjct: 74 SKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQEN 133
Query: 363 RREYEKRVKECVEESWL 413
RREYEKRV++ VE+SWL
Sbjct: 134 RREYEKRVQQIVEQSWL 150
>sp|Q9Z255|UBE2A_MOUSE Ubiquitin-conjugating enzyme E2 A (Ubiquitin-protein ligase A)
(Ubiquitin carrier protein A) (HR6A) (mHR6A)
sp|P49459|UBE2A_HUMAN Ubiquitin-conjugating enzyme E2 A (Ubiquitin-protein ligase A)
(Ubiquitin carrier protein A) (HR6A) (hHR6A)
Length = 152
Score = 236 bits (603), Expect = 2e-62
Identities = 111/136 (81%), Positives = 120/136 (88%)
Frame = +3
Query: 3 KRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFSEEYPNKPPRVVFT 182
KRLQ+DPPAGV GAP ++NIM WNAVIFGP+GTPFEDGTF L +EF+EEYPNKPP V F
Sbjct: 14 KRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFV 73
Query: 183 SKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNSPANSVAAQLYTEN 362
SKMFHPNVYADGSICLDIL N WSPTYDV +ILTSIQSLLDEPNPNSPANS AAQLY EN
Sbjct: 74 SKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQEN 133
Query: 363 RREYEKRVKECVEESW 410
+REYEKRV VE+SW
Sbjct: 134 KREYEKRVSAIVEQSW 149
>sp|P63146|UBE2B_HUMAN Ubiquitin-conjugating enzyme E2 B (Ubiquitin-protein ligase B)
(Ubiquitin carrier protein B) (HR6B) (hHR6B) (E2-17 kDa)
sp|P63148|UBE2B_RABIT Ubiquitin-conjugating enzyme E2 B (Ubiquitin-protein ligase B)
(Ubiquitin carrier protein B) (HR6B) (E2(14k))
sp|P63147|UBE2B_MOUSE Ubiquitin-conjugating enzyme E2 B (Ubiquitin-protein ligase B)
(Ubiquitin carrier protein B) (HR6B) (E214K)
sp|P63149|UBE2B_RAT Ubiquitin-conjugating enzyme E2 B (Ubiquitin-protein ligase B)
(Ubiquitin carrier protein B) (HR6B) (E2(14k))
Length = 152
Score = 235 bits (599), Expect = 5e-62
Identities = 111/136 (81%), Positives = 119/136 (87%)
Frame = +3
Query: 3 KRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFSEEYPNKPPRVVFT 182
KRLQ+DPP GV GAP ++NIM WNAVIFGP+GTPFEDGTF L +EFSEEYPNKPP V F
Sbjct: 14 KRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFL 73
Query: 183 SKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNSPANSVAAQLYTEN 362
SKMFHPNVYADGSICLDIL N WSPTYDV +ILTSIQSLLDEPNPNSPANS AAQLY EN
Sbjct: 74 SKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQEN 133
Query: 363 RREYEKRVKECVEESW 410
+REYEKRV VE+SW
Sbjct: 134 KREYEKRVSAIVEQSW 149
>sp|P25153|UBCD6_DROME Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 151
Score = 233 bits (594), Expect = 2e-61
Identities = 109/138 (78%), Positives = 119/138 (86%)
Frame = +3
Query: 3 KRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFSEEYPNKPPRVVFT 182
KRLQ+DPP GV GAP D+NIM WNAVIFGP TPFEDGTF L +EF+EEYPNKPP V F
Sbjct: 14 KRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFV 73
Query: 183 SKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNSPANSVAAQLYTEN 362
SK+FHPNVYADG ICLDIL N WSPTYDV AILTSIQSLL +PNPNSPANS AAQLY EN
Sbjct: 74 SKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKEN 133
Query: 363 RREYEKRVKECVEESWLE 416
RREYEKRVK CVE+S+++
Sbjct: 134 RREYEKRVKACVEQSFID 151
>sp|P35130|UBC2_MEDSA Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 152
Score = 219 bits (557), Expect = 4e-57
Identities = 100/136 (73%), Positives = 117/136 (86%)
Frame = +3
Query: 3 KRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFSEEYPNKPPRVVFT 182
KRLQ DPPAG+ GAP D+NIM WNAVIFGPD TP++ GTF L L+FSE+YPNKPP V F
Sbjct: 14 KRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFV 73
Query: 183 SKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNSPANSVAAQLYTEN 362
S+MFHPN+YADGSICLDIL N WSP YDV AILTSIQSLL +PNPNSPANS AA++++EN
Sbjct: 74 SRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN 133
Query: 363 RREYEKRVKECVEESW 410
+REY +RV+E VE+SW
Sbjct: 134 KREYNRRVREVVEQSW 149
>sp|P25865|UBC1_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 1 (Ubiquitin-protein ligase
1) (Ubiquitin carrier protein 1)
Length = 152
Score = 218 bits (554), Expect = 9e-57
Identities = 99/136 (72%), Positives = 117/136 (86%)
Frame = +3
Query: 3 KRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFSEEYPNKPPRVVFT 182
KRLQ DPPAG+ GAP D+NIM WNAVIFGPD TP++ GTF L L+FSE+YPNKPP V F
Sbjct: 14 KRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFV 73
Query: 183 SKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNSPANSVAAQLYTEN 362
S+MFHPN+YADGSICLDIL N WSP YDV AILTSIQSLL +PNPNSPANS AA++Y+E+
Sbjct: 74 SRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSES 133
Query: 363 RREYEKRVKECVEESW 410
+REY +RV++ VE+SW
Sbjct: 134 KREYNRRVRDVVEQSW 149
>sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 2 (Ubiquitin-protein ligase
2) (Ubiquitin carrier protein 2)
Length = 152
Score = 217 bits (553), Expect = 1e-56
Identities = 99/136 (72%), Positives = 117/136 (86%)
Frame = +3
Query: 3 KRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFSEEYPNKPPRVVFT 182
KRLQ DPPAG+ GAP D+NIM WNAVIFGPD TP++ GTF L L+FSE+YPNKPP V F
Sbjct: 14 KRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFV 73
Query: 183 SKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNSPANSVAAQLYTEN 362
S+MFHPN+YADGSICLDIL N WSP YDV AILTSIQSLL +PNPNSPANS AA++++E+
Sbjct: 74 SRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSES 133
Query: 363 RREYEKRVKECVEESW 410
+REY +RV+E VE+SW
Sbjct: 134 KREYNRRVREVVEQSW 149
>sp|P25866|UBC2_WHEAT Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 152
Score = 216 bits (550), Expect = 2e-56
Identities = 98/136 (72%), Positives = 116/136 (85%)
Frame = +3
Query: 3 KRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFSEEYPNKPPRVVFT 182
KRLQ DPPAG+ GAP D+NI WNAVIFGPD TP++ GTF L L+F+E+YPNKPP V F
Sbjct: 14 KRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV 73
Query: 183 SKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNSPANSVAAQLYTEN 362
S+MFHPN+YADGSICLDIL N WSP YDV AILTSIQSLL +PNPNSPANS AA++Y+EN
Sbjct: 74 SRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSEN 133
Query: 363 RREYEKRVKECVEESW 410
+REY ++V+E VE+SW
Sbjct: 134 KREYNRKVREVVEQSW 149
>sp|P42746|UBC3_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 3 (Ubiquitin-protein ligase
3) (Ubiquitin carrier protein 3)
Length = 150
Score = 204 bits (519), Expect = 1e-52
Identities = 92/137 (67%), Positives = 116/137 (84%)
Frame = +3
Query: 3 KRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFSEEYPNKPPRVVFT 182
KRLQ DPP G+ GAP D+NIM+WNA+IFGP+ TP++ GTF L L F+E+YPNKPP V F
Sbjct: 14 KRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFV 73
Query: 183 SKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNSPANSVAAQLYTEN 362
S+MFHPN+YADGSICLDIL N WSP YDV A+LTSIQSLL +PNP+SPAN+ AA+L++EN
Sbjct: 74 SRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSEN 133
Query: 363 RREYEKRVKECVEESWL 413
+REY ++V E VE+S++
Sbjct: 134 KREYNRKVIEIVEQSYV 150
>sp|P23566|UBC2_SCHPO Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase 2)
(Ubiquitin carrier protein) (RAD6 homolog)
Length = 151
Score = 203 bits (516), Expect = 2e-52
Identities = 93/136 (68%), Positives = 110/136 (80%)
Frame = +3
Query: 3 KRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFSEEYPNKPPRVVFT 182
KR+Q DPPAGV +P+ DN+M WNAVI GP TPFEDGTF L L F E+YPNKPP V F
Sbjct: 14 KRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFV 73
Query: 183 SKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNSPANSVAAQLYTEN 362
S MFHPNVYA+G +CLDIL N WSPTYDV AILTSIQSLL++PN SPAN+ AAQL+ EN
Sbjct: 74 STMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHREN 133
Query: 363 RREYEKRVKECVEESW 410
++EY +RV++ VE+SW
Sbjct: 134 KKEYVRRVRKTVEDSW 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,040,832
Number of Sequences: 369166
Number of extensions: 1379371
Number of successful extensions: 4239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4180
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)