Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B24
(480 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14880|MGST3_HUMAN Microsomal glutathione S-transferase ... 84 2e-16
sp|Q9CPU4|MGST3_MOUSE Microsomal glutathione S-transferase ... 84 2e-16
sp|P73795|Y1147_SYNY3 Hypothetical protein sll1147 53 4e-07
sp|Q16873|LTC4S_HUMAN Leukotriene C4 synthase (Leukotriene-... 36 0.052
sp|P55493|Y4IJ_RHISN Hypothetical 65.5 kDa protein y4iJ 32 0.98
sp|P27284|POLS_EEEV3 Structural polyprotein (P130) [Contain... 30 3.7
sp|P34304|YKQ9_CAEEL Hypothetical protein C06E1.9 in chromo... 29 4.9
sp|P79382|MGST1_PIG Microsomal glutathione S-transferase 1 ... 28 8.3
>sp|O14880|MGST3_HUMAN Microsomal glutathione S-transferase 3 (Microsomal GST-3)
(Microsomal GST-III)
Length = 152
Score = 83.6 bits (205), Expect = 2e-16
Identities = 51/127 (40%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Frame = +2
Query: 11 AETYLLNFYLMYKVAKARKQYDVKFPTLYSDTSEE---FNCIQRSHQNYLENITFFIPFL 181
A ++++ +L V+KARK+Y V++P +YS E FNCIQR+HQN LE F+ FL
Sbjct: 16 AASFIMVAHLAINVSKARKKYKVEYPIMYSTDPENGHIFNCIQRAHQNTLEVYPPFLFFL 75
Query: 182 LVSGLEFPRFTILCGKAFLIGRVLFDRGYTAEDPNKRKLGFKISLFGGLMPLVGAVGVMA 361
V G+ PR G A+++GRVL+ GY +P+KR G G + L+G VG
Sbjct: 76 AVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKRSRGAL-----GSIALLGLVGT-T 129
Query: 362 VGKCFLH 382
V F H
Sbjct: 130 VCSAFQH 136
>sp|Q9CPU4|MGST3_MOUSE Microsomal glutathione S-transferase 3 (Microsomal GST-3)
(Microsomal GST-III)
Length = 153
Score = 83.6 bits (205), Expect = 2e-16
Identities = 50/114 (43%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Frame = +2
Query: 11 AETYLLNFYLMYKVAKARKQYDVKFPTLYSDTSEE---FNCIQRSHQNYLENITFFIPFL 181
A ++++ +L V KARK+Y V++P +YS E FNCIQR+HQN LE F+ FL
Sbjct: 16 AASFVMVLHLAINVGKARKKYKVEYPVMYSTDPENGHMFNCIQRAHQNTLEVYPPFLFFL 75
Query: 182 LVSGLEFPRFTILCGKAFLIGRVLFDRGYTAEDPNKRKLGFKISLFGGLMPLVG 343
V G+ PR G A++IGRVL+ GY DP+KR G SL L L+G
Sbjct: 76 TVGGVYHPRIASGLGLAWIIGRVLYAYGYYTGDPSKRYRGAVGSL--ALFALMG 127
>sp|P73795|Y1147_SYNY3 Hypothetical protein sll1147
Length = 137
Score = 52.8 bits (125), Expect = 4e-07
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Frame = +2
Query: 5 ILAETYLLNFYLMYKVAKARKQYDVKFPTLYSDTSEEFNCIQRSHQNYLENITFFIPFL- 181
I A +L L+ V +AR +Y V P + +E+F + R N LE + FF+P L
Sbjct: 12 ITALATMLYLVLVINVGRARAKYGVMPPA--TTGNEDFERVLRVQYNTLEQLAFFLPGLW 69
Query: 182 LVSGLEFPRFTILCGKAFLIGRVLFDRGYTAEDPNKRKLGFKISLFGGLMPLVGAV 349
L + P + G +L+GR+L+ GY + KR +GF + ++ +VGA+
Sbjct: 70 LFAIYRDPTIAAILGAVWLLGRILYAWGY-YQAAEKRMVGFALGSLSSMILVVGAL 124
>sp|Q16873|LTC4S_HUMAN Leukotriene C4 synthase (Leukotriene-C(4) synthase) (LTC4 synthase)
Length = 150
Score = 35.8 bits (81), Expect = 0.052
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 23 LLNFYLMYKVAKARKQYDVKFPTLYSDTSEEFNCIQRSHQNYLENITFFIPFLLVSGLEF 202
LL Y +V AR+ + V P + EF + R+ N E F+ L V+G+ F
Sbjct: 17 LLQAYFSLQVISARRAFRVSPPL--TTGPPEFERVYRAQVNCSEYFPLFLATLWVAGIFF 74
Query: 203 PR-FTILCGKAFLIGRVLFDRGY 268
LCG +L R+ + +GY
Sbjct: 75 HEGAAALCGLVYLFARLRYFQGY 97
>sp|P55493|Y4IJ_RHISN Hypothetical 65.5 kDa protein y4iJ
Length = 596
Score = 31.6 bits (70), Expect = 0.98
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 158 ITFFIPFLLVSGLEFPRFTILCGKAFLIGRVLFDRGYTAEDPNKRKLGF 304
+TF +P+ ++ LE P FT+ G FL L G+ D + +GF
Sbjct: 65 VTFSMPYEWLAALEQPTFTLTAGPPFLSSDYLDRFGFITADSSGLPVGF 113
>sp|P27284|POLS_EEEV3 Structural polyprotein (P130) [Contains: Coat protein C (Capsid
protein C); Spike glycoprotein E3; Spike glycoprotein
E2; 6 kDa peptide; Spike glycoprotein E1]
Length = 1240
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 86 PTLYSDTSEEFNCIQRSHQNYLENITFFIPFLLVSGLEFPRFTILCGKAFLI--GRVLFD 259
PT DT + N + ++QN+ T L+ + R CG AFL+ G
Sbjct: 740 PTRADDTLQVLNYLWNNNQNFFWMQTLIPLAALIVCMRIVRCLFCCGPAFLLVCGAWAAA 799
Query: 260 RGYTAEDPNKRKLGFK 307
+TA PNK + +K
Sbjct: 800 YEHTAVMPNKVGIPYK 815
>sp|P34304|YKQ9_CAEEL Hypothetical protein C06E1.9 in chromosome III
Length = 643
Score = 29.3 bits (64), Expect = 4.9
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 62 RKQYDVKFPTLYSDTSEEFNCIQRSHQNYLENITFFIPFLLVSG 193
RK +F + S TS E +H+N LEN+T +P LL +G
Sbjct: 53 RKSDSFRFSAISSKTSWE-----SAHRNLLENLTKTVPVLLENG 91
>sp|P79382|MGST1_PIG Microsomal glutathione S-transferase 1 (Microsomal GST-1)
(Microsomal GST-I)
Length = 155
Score = 28.5 bits (62), Expect = 8.3
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Frame = +2
Query: 95 YSDTSEEFNCIQRSHQNYLENITFFIPFLLVSGLEFPRFT--ILCGKAFLIGRVLFDRGY 268
Y T E ++R+H N LENI F+ L+ L P + IL + F+ R+ Y
Sbjct: 62 YLRTDERVERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTAILHFRLFVGARIYHTIAY 121
Query: 269 TAEDPNKRK-----LGFKISL 316
P + LG+ ++L
Sbjct: 122 LTPLPQPNRGLAFFLGYGVTL 142
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,003,934
Number of Sequences: 369166
Number of extensions: 930625
Number of successful extensions: 2024
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2021
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)