Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B19
(176 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99JY0|ECHB_MOUSE Trifunctional enzyme beta subunit, mit... 57 1e-08
sp|Q60587|ECHB_RAT Trifunctional enzyme beta subunit, mitoc... 57 1e-08
sp|Q5R1W7|ECHB_PANTR Trifunctional enzyme beta subunit, mit... 57 1e-08
sp|O46629|ECHB_BOVIN Trifunctional enzyme beta subunit, mit... 57 1e-08
sp|Q8HXX4|ECHB_MACFA Trifunctional enzyme beta subunit, mit... 57 1e-08
sp|P34255|YKA3_CAEEL Hypothetical protein B0303.3 in chromo... 47 2e-05
sp|Q43974|PCAF_ACIAD Beta-ketoadipyl CoA thiolase 34 0.091
sp|Q43935|CATF_ACIAD Beta-ketoadipyl CoA thiolase 34 0.091
sp|Q8BWT1|THIM_MOUSE 3-ketoacyl-CoA thiolase, mitochondrial... 33 0.20
sp|P76503|FADI_ECOLI 3-ketoacyl-CoA thiolase (Fatty acid ox... 33 0.20
>sp|Q99JY0|ECHB_MOUSE Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 57.4 bits (137), Expect = 1e-08
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +3
Query: 15 VTTAANRLIKEKGQFALVAACAAGGQGHAILIENYP 122
V AANRL K+ GQ+ALVAACAAGGQGHA+++E YP
Sbjct: 439 VMAAANRLRKDGGQYALVAACAAGGQGHAMIVEAYP 474
>sp|Q60587|ECHB_RAT Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 57.4 bits (137), Expect = 1e-08
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +3
Query: 15 VTTAANRLIKEKGQFALVAACAAGGQGHAILIENYP 122
V AANRL K+ GQ+ALVAACAAGGQGHA+++E YP
Sbjct: 439 VMAAANRLRKDGGQYALVAACAAGGQGHAMIVEAYP 474
>sp|Q5R1W7|ECHB_PANTR Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
sp|P55084|ECHB_HUMAN Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 57.0 bits (136), Expect = 1e-08
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +3
Query: 15 VTTAANRLIKEKGQFALVAACAAGGQGHAILIENYP 122
V AANRL KE GQ+ LVAACAAGGQGHA+++E YP
Sbjct: 439 VMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYP 474
>sp|O46629|ECHB_BOVIN Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 57.0 bits (136), Expect = 1e-08
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +3
Query: 15 VTTAANRLIKEKGQFALVAACAAGGQGHAILIENYP 122
V AANRL KE GQ+ LVAACAAGGQGHA+++E YP
Sbjct: 439 VMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYP 474
>sp|Q8HXX4|ECHB_MACFA Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 57.0 bits (136), Expect = 1e-08
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +3
Query: 15 VTTAANRLIKEKGQFALVAACAAGGQGHAILIENYP 122
V AANRL KE GQ+ LVAACAAGGQGHA+++E YP
Sbjct: 439 VMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYP 474
>sp|P34255|YKA3_CAEEL Hypothetical protein B0303.3 in chromosome III
Length = 448
Score = 46.6 bits (109), Expect = 2e-05
Identities = 23/39 (58%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +3
Query: 6 GTRVTT-AANRLIKEKGQFALVAACAAGGQGHAILIENY 119
G R+ T +A+RL +EKGQ+A++AACAAGG G +LIE Y
Sbjct: 408 GVRLATHSAHRLKEEKGQYAVIAACAAGGHGVGMLIEAY 446
>sp|Q43974|PCAF_ACIAD Beta-ketoadipyl CoA thiolase
Length = 401
Score = 34.3 bits (77), Expect = 0.091
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 15 VTTAANRLIKEKGQFALVAACAAGGQGHAILIE 113
VTTA N+L + G++AL + C GQG A++IE
Sbjct: 367 VTTALNQLEQSGGKYALCSMCIGVGQGIALIIE 399
>sp|Q43935|CATF_ACIAD Beta-ketoadipyl CoA thiolase
Length = 401
Score = 34.3 bits (77), Expect = 0.091
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 15 VTTAANRLIKEKGQFALVAACAAGGQGHAILIE 113
VTTA N+L + G++AL + C GQG A++IE
Sbjct: 367 VTTALNQLEQSGGKYALCSMCIGVGQGIALIIE 399
>sp|Q8BWT1|THIM_MOUSE 3-ketoacyl-CoA thiolase, mitochondrial (Beta-ketothiolase)
(Acetyl-CoA acyltransferase) (Mitochondrial
3-oxoacyl-CoA thiolase)
Length = 397
Score = 33.1 bits (74), Expect = 0.20
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 6 GTRVTT-AANRLIKEKGQFALVAACAAGGQGHAILIEN 116
G+R+T + L + G++A+ +AC GGQG A++I+N
Sbjct: 358 GSRITAHLVHELRRRGGKYAVGSACIGGGQGIALIIQN 395
>sp|P76503|FADI_ECOLI 3-ketoacyl-CoA thiolase (Fatty acid oxidation complex beta subunit)
(Beta-ketothiolase) (Acetyl-CoA acyltransferase)
(Acyl-CoA ligase) (ACSs)
Length = 436
Score = 33.1 bits (74), Expect = 0.20
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 15 VTTAANRLIKEKGQFALVAACAAGGQGHAILIE 113
+T + L + G F LV ACAAGG G A+++E
Sbjct: 402 ITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,336,790
Number of Sequences: 369166
Number of extensions: 268705
Number of successful extensions: 671
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 68,354,980
effective HSP length: 31
effective length of database: 62,628,195
effective search space used: 1690961265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)