Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B12
(540 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QZI9|SERC3_MOUSE Serine incorporator 3 (Tumor differen... 129 3e-30
sp|Q13530|SERC3_HUMAN Serine incorporator 3 (Tumor differen... 128 8e-30
sp|Q9NRX5|SERC1_HUMAN Serine incorporator 1 (Tumor differen... 126 4e-29
sp|Q9QZI8|SERC1_MOUSE Serine incorporator 1 (Tumor differen... 124 1e-28
sp|Q8K0E7|SERC2_MOUSE Serine incorporator 2 (Tumor differen... 114 2e-25
sp|Q96SA4|SERC2_HUMAN Serine incorporator 2 (Tumor differen... 108 1e-23
sp|Q9HDY3|YK17_SCHPO Membrane protein PB1A10.07c 69 6e-12
sp|Q12116|TMS1_YEAST Membrane protein TMS1 66 6e-11
sp|P51097|NU5C_ASTCO NAD(P)H-quinone oxidoreductase chain 5... 30 2.9
sp|Q7NH24|LPXD2_GLOVI UDP-3-O-[3-hydroxymyristoyl] glucosam... 29 6.4
>sp|Q9QZI9|SERC3_MOUSE Serine incorporator 3 (Tumor differentially expressed protein 1)
(Membrane protein TMS-1) (Axotomy-induced glycoprotein
1) (Axotomy-induced glyco/Golgi protein 1) (AIGP-1)
Length = 472
Score = 129 bits (325), Expect = 3e-30
Identities = 58/132 (43%), Positives = 90/132 (68%)
Frame = +3
Query: 3 VIFLITVIYSSIRSSGHTSVGKLTMHGSETAILSDQESGVPVSKNQETGQSVWDNEEDGV 182
+IF+ +IYSS R+S ++ V KLT+ GS++ IL D +G ++ + ++V DNE++GV
Sbjct: 342 IIFVFCLIYSSFRTSSNSQVNKLTLSGSDSVILGDTTNGANDEEDGQPRRAV-DNEKEGV 400
Query: 183 AYDYSFFHFMFFLGSLYVMMTLTNWYQPSSNLMTLNANDASVWVKIVSSWLCIAIYLWTL 362
Y YSFFH M SLY+MMT+T+WY P + +++ +VW K+ SSWLC+ +YLWTL
Sbjct: 401 QYSYSFFHLMLCCASLYIMMTITSWYSPDAKFQKVSSKWLAVWFKMGSSWLCLLLYLWTL 460
Query: 363 MAPCLFPDREFN 398
+AP + R+F+
Sbjct: 461 VAPLVLTGRDFS 472
>sp|Q13530|SERC3_HUMAN Serine incorporator 3 (Tumor differentially expressed protein 1)
Length = 473
Score = 128 bits (322), Expect = 8e-30
Identities = 56/131 (42%), Positives = 87/131 (66%)
Frame = +3
Query: 6 IFLITVIYSSIRSSGHTSVGKLTMHGSETAILSDQESGVPVSKNQETGQSVWDNEEDGVA 185
+F++ ++YSSIR+S ++ V KLT+ GS++ IL D + + + DNE++GV
Sbjct: 343 VFVLCLLYSSIRTSTNSQVDKLTLSGSDSVILGDTTTSGASDEEDGQPRRAVDNEKEGVQ 402
Query: 186 YDYSFFHFMFFLGSLYVMMTLTNWYQPSSNLMTLNANDASVWVKIVSSWLCIAIYLWTLM 365
Y YS FH M L SLY+MMTLT+WY P + ++ + +VWVKI SSW+C+ +Y+WTL+
Sbjct: 403 YSYSLFHLMLCLASLYIMMTLTSWYSPDAKFQSMTSKWPAVWVKISSSWVCLLLYVWTLV 462
Query: 366 APCLFPDREFN 398
AP + R+F+
Sbjct: 463 APLVLTSRDFS 473
>sp|Q9NRX5|SERC1_HUMAN Serine incorporator 1 (Tumor differentially expressed protein 2)
(Tumor differentially expressed 1 protein-like)
Length = 453
Score = 126 bits (316), Expect = 4e-29
Identities = 65/137 (47%), Positives = 89/137 (64%), Gaps = 5/137 (3%)
Frame = +3
Query: 3 VIFLITVIYSSIRSSGHTSVGKLTMHGSETAILSDQESGVPVSKNQETGQSVW---DNEE 173
++FL+ V YSSIR+S ++ V KLT+ E+ ++ D G + E G V DNE
Sbjct: 322 ILFLLCVFYSSIRTSNNSQVNKLTLTSDESTLIED--GGARSDGSLEDGDDVHRAVDNER 379
Query: 174 DGVAYDYSFFHFMFFLGSLYVMMTLTNW--YQPSSNLMTLNANDASVWVKIVSSWLCIAI 347
DGV Y YSFFHFM FL SLY+MMTLTNW Y+PS + + +VWVKI SSW+ I +
Sbjct: 380 DGVTYSYSFFHFMLFLASLYIMMTLTNWYRYEPSRE---MKSQWTAVWVKISSSWIGIVL 436
Query: 348 YLWTLMAPCLFPDREFN 398
Y+WTL+AP + +R+F+
Sbjct: 437 YVWTLVAPLVLTNRDFD 453
>sp|Q9QZI8|SERC1_MOUSE Serine incorporator 1 (Tumor differentially expressed protein 2)
(Tumor differentially expressed 1 protein-like)
(Membrane protein TMS-2) (Axotomy-induced glyco/Golgi
protein 2)
Length = 453
Score = 124 bits (311), Expect = 1e-28
Identities = 63/135 (46%), Positives = 87/135 (64%), Gaps = 3/135 (2%)
Frame = +3
Query: 3 VIFLITVIYSSIRSSGHTSVGKLTMHGSETAILSDQESGVPVSKNQETG-QSVWDNEEDG 179
V+FL+ V YSSIR+S ++ V KLT+ E+ ++ D S + G DNE DG
Sbjct: 322 VLFLLCVFYSSIRTSNNSQVNKLTLTSDESTLIEDGNGRSDGSLDDGDGIHRAVDNERDG 381
Query: 180 VAYDYSFFHFMFFLGSLYVMMTLTNW--YQPSSNLMTLNANDASVWVKIVSSWLCIAIYL 353
V Y YSFFHFM FL SLY+MMTLTNW Y+PS + + +VWVKI SSW+ + +Y+
Sbjct: 382 VTYSYSFFHFMLFLASLYIMMTLTNWYRYEPSRE---MKSQWTAVWVKISSSWIGLVLYV 438
Query: 354 WTLMAPCLFPDREFN 398
WTL+AP + +R+F+
Sbjct: 439 WTLVAPLVLTNRDFD 453
>sp|Q8K0E7|SERC2_MOUSE Serine incorporator 2 (Tumor differentially expressed 2-like)
Length = 450
Score = 114 bits (285), Expect = 2e-25
Identities = 61/132 (46%), Positives = 79/132 (59%)
Frame = +3
Query: 3 VIFLITVIYSSIRSSGHTSVGKLTMHGSETAILSDQESGVPVSKNQETGQSVWDNEEDGV 182
VIF++ + S+RSS H V L M E Q+ V VS + +DNE+DGV
Sbjct: 326 VIFILCTFFISLRSSDHRQVNSL-MQTEECPAEMVQQQQVAVSDGR-----AYDNEQDGV 379
Query: 183 AYDYSFFHFMFFLGSLYVMMTLTNWYQPSSNLMTLNANDASVWVKIVSSWLCIAIYLWTL 362
Y YSFFHF L SL+VMMTLTNWY P + + SVWVKI +SW + +YLWTL
Sbjct: 380 TYSYSFFHFCLVLASLHVMMTLTNWYSPGETRKMI-STWTSVWVKICASWAGLFLYLWTL 438
Query: 363 MAPCLFPDREFN 398
+AP L P+R+F+
Sbjct: 439 VAPLLLPNRDFS 450
>sp|Q96SA4|SERC2_HUMAN Serine incorporator 2 (Tumor differentially expressed 2-like)
Length = 456
Score = 108 bits (269), Expect = 1e-23
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Frame = +3
Query: 3 VIFLITVIYSSIRSSGHTSVGKLTMHGSETAILSDQESGVPVSKNQETGQSV-------W 161
+IFL+ ++ S+RSS H V L + +E + Q+ Q V +
Sbjct: 328 IIFLLCTLFISLRSSDHRQVNSL---------MQTEECPPMLDATQQQQQQVAACEGRAF 378
Query: 162 DNEEDGVAYDYSFFHFMFFLGSLYVMMTLTNWYQPSSNLMTLNANDASVWVKIVSSWLCI 341
DNE+DGV Y YSFFHF L SL+VMMTLTNWY+P ++ A VWVKI +SW +
Sbjct: 379 DNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWYKPGETRKMISTWTA-VWVKICASWAGL 437
Query: 342 AIYLWTLMAPCLFPDREFN 398
+YLWTL+AP L +R+F+
Sbjct: 438 LLYLWTLVAPLLLRNRDFS 456
>sp|Q9HDY3|YK17_SCHPO Membrane protein PB1A10.07c
Length = 441
Score = 69.3 bits (168), Expect = 6e-12
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Frame = +3
Query: 18 TVIYSSIRSSGHTSVGKLTMHGSETAILSDQESGVPVSKNQETGQSVWDNEEDGVAYDYS 197
T++YS++R++ S + + +D + VS E G S EED DY+
Sbjct: 316 TILYSAVRAASSRE-----SDDSYSYLYADSHD-MGVSTPLEDGSS----EEDKHQSDYN 365
Query: 198 F--FHFMFFLGSLYVMMTLTNW-----YQPSSN--LMTLNANDASVWVKIVSSWLCIAIY 350
F FH +F L + Y LTNW Y+ N + + + A+VWVKI++SW+C +Y
Sbjct: 366 FIWFHIVFVLAAFYTASLLTNWNTTSVYENQKNDVFVRIGFSYAAVWVKIITSWVCHGLY 425
Query: 351 LWTLMAPCLFPDR 389
+W+ +AP FP R
Sbjct: 426 VWSCLAPVFFPYR 438
>sp|Q12116|TMS1_YEAST Membrane protein TMS1
Length = 473
Score = 65.9 bits (159), Expect = 6e-11
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Frame = +3
Query: 162 DNEEDGVAYDYSFFHFMFFLGSLYVMMTLT-NWYQPS-SNLMTLNANDASVWVKIVSSWL 335
D+E G Y+Y+ FH +FFL + ++ + LT N Q + + + WVKIVS+W+
Sbjct: 389 DDERTGTKYNYTLFHVIFFLATQWIAILLTINVTQDDVGDFIPVGRTYFYSWVKIVSAWI 448
Query: 336 CIAIYLWTLMAPCLFPDR 389
C A+Y WT++AP + PDR
Sbjct: 449 CYALYGWTVVAPAIMPDR 466
>sp|P51097|NU5C_ASTCO NAD(P)H-quinone oxidoreductase chain 5, chloroplast (NAD(P)H
dehydrogenase, chain 5) (NADH-plastoquinone
oxidoreductase chain 5)
Length = 741
Score = 30.4 bits (67), Expect = 2.9
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Frame = +3
Query: 201 FHFMFFLGSLYVMMT-----LTNWYQPSSNLMTLNANDASVW----------VKIVSSWL 335
F F F+G L + + LT W PS NL+ N+N++ W V I S +
Sbjct: 556 FIFTLFVGFLGIPLNQDVDILTKWLTPSINLLHKNSNNSIDWYEFCKDALFSVSIASFGI 615
Query: 336 CIAIYLW 356
IA +L+
Sbjct: 616 FIAFFLY 622
>sp|Q7NH24|LPXD2_GLOVI UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2
Length = 345
Score = 29.3 bits (64), Expect = 6.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 21 VIYSSIRSSGHTSVGKLTMHGSETAILSDQESGVPVSKNQETGQSVW 161
V+ + +GH ++G T+ +++ I SD E G VS + ++W
Sbjct: 263 VLAGQVGVAGHAAIGDRTVVSAQSGIPSDVEPGTVVSGSPALPHALW 309
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,604,620
Number of Sequences: 369166
Number of extensions: 1176758
Number of successful extensions: 2925
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2914
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)